Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1540 ATGGTGGCCAAGAAACCAAAGATTGTGATAATTGGTGCAGGAATGGCAGGCCTAACAGCAGCCAACAAACTCTACACTGCAACCTCCTCAATGGACTTGTTTGATCTATGTGTTGTTGAAGGTGGAACAAGAATTGGTGGTAGAATCAACACTTCAGAATTTGGTGGTGATAGAATTGAAATGGGTGCTACTTGGATCCATGGAATTTGTGGCAGCCCAATTCACAACATTGCTCAAGAAATCCATTCACTTCATTCTGATAAGCCTTGGGAATGCATGGATGGAAACTCAGATGAGAACAATACTATAACCATTGCTGAAGGTGGATACCAACTTCACCCTTCAATTGTTGAGCCTGTTACAAAGCTTTTCAAGAACTTGATGAACCATTGTCAAGGGAAGGTGCTCATTGAAGAGAAAGAGAAGGAGAAAGAGAAAGGTGGTGTTGGGTATGGGAACAACCTTAGTGTTGGTTCTTTTCTTAGACAAGGACTTGATGCTTATTTTGGTTCAGTGAAAGAGGAAGAAGAGGTTAAAGGGTATGGGAATTGGAGTAGGAAAATGCTTGAAGAAGGTGTTTTTGCAATGCACGAGAACACTGAGAGGACTTATACATCAGCTGGTGATTTGTTGAGTCTAGATTATGGTGCTGAGAGTGAGTATAGAATGTTTCCAGGTGAAGAAATCACTATTGCTAAAGGGTACTTGAGCATCATTGAATCCTTAGCTTCTGTGCTACCACAAGGGGTGGTTCAGTTAGGTAGAAAAGTCACAAAGATTGAGTGGCAGCCACAGAAAGATGATGATGTTTATGATGTTGAGATGAAGGTTTTGGTTAATGGTTGTAGTTCTAGGCCTGTGAAGTTGCATTTTTGTGATGGTTCTGTGATGCATGCTGATCATGTAATTATCACTGTTTCACTAGGGGTGCTAAAAGCTGCTATTGATAATGATTCAGGTATGTTTTTCTGTCCTTCACTTCCACCTTCTAAGGCTGAAGCAATTTCAAGGCTTGGTTTTGGTGTTGTTAACAAGTTGTTTATGCAATTGAGTCCAAGTATAAAACATGAGAAAGAGCACTTTCCATTCTTGCAAATGGTTTTTCATTCGCCTGAATCTGAAATGAGGGACAAGAAAATACCATGGTGGATGAGAAAAACAGCTACACTTCTTCCTATTTATAACAACTCTAGTGTCCTATTATCTTGGTTTGCTGGTGAAGAAGCATTAGCACTTGAGTCACTCAATGATGAAGAGATTCTCAATGGAGCTTCAACAACATTTTCAACCTTTCTTTCACATTACAAGTCTCATAATACATTGTGCAATGGAAATGTGAATTCTGATAAAAAGTCTAATCAAAATGAAGTGAAGTTCAGTAAAGTGTTGAAGAGTAAATGGGGTACTGACCCTTTGTTTTTAGGGTCATATAGTTATGTTTCTGTAGGATCAAGTGGTGATGATTTAGATACAATGGCTGAACCATTGCCAAAAGACAACAATTTTCAACCTCATGCTTCATTTCCACTGCAAATTTTGTTTGCAGGAGAAGCAACTCATAGAACTCATTATTCTACAACTCATGGAGCTTATTTCAGTGGACTCAGAGAAGCTAATAGAATTCTTCAACATTATCACTGTGTTGGGATTATTAACTAG 1659 0.3882 MVAKKPKIVIIGAGMAGLTAANKLYTATSSMDLFDLCVVEGGTRIGGRINTSEFGGDRIEMGATWIHGICGSPIHNIAQEIHSLHSDKPWECMDGNSDENNTITIAEGGYQLHPSIVEPVTKLFKNLMNHCQGKVLIEEKEKEKEKGGVGYGNNLSVGSFLRQGLDAYFGSVKEEEEVKGYGNWSRKMLEEGVFAMHENTERTYTSAGDLLSLDYGAESEYRMFPGEEITIAKGYLSIIESLASVLPQGVVQLGRKVTKIEWQPQKDDDVYDVEMKVLVNGCSSRPVKLHFCDGSVMHADHVIITVSLGVLKAAIDNDSGMFFCPSLPPSKAEAISRLGFGVVNKLFMQLSPSIKHEKEHFPFLQMVFHSPESEMRDKKIPWWMRKTATLLPIYNNSSVLLSWFAGEEALALESLNDEEILNGASTTFSTFLSHYKSHNTLCNGNVNSDKKSNQNEVKFSKVLKSKWGTDPLFLGSYSYVSVGSSGDDLDTMAEPLPKDNNFQPHASFPLQILFAGEATHRTHYSTTHGAYFSGLREANRILQHYHCVGIIN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1540 552 PANTHER POLYAMINE OXIDASE 5-RELATED 1 549 - -
Lal17g1540 552 SUPERFAMILY FAD/NAD(P)-binding domain 1 545 IPR036188 -
Lal17g1540 552 Gene3D - 96 485 - -
Lal17g1540 552 SUPERFAMILY FAD-linked reductases, C-terminal domain 339 479 - -
Lal17g1540 552 Pfam Flavin containing amine oxidoreductase 15 542 IPR002937 GO:0016491
Lal17g1540 552 Gene3D - 8 540 IPR036188 -
Lal17g1540 552 PANTHER FLAVIN MONOAMINE OXIDASE 1 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1540 Lal-Chr17 16806820 16808478 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1540 K12259 - gmx:100783032 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1540 17 16806820 16808478 Lal17g1540 17 16806820 16808478 ECH
Lal17g1540 17 16806820 16808478 Lal4g1549 4 19673444 19675129 LSH
Lal14g1678 14 16985044 16986705 Lal17g1540 17 16806820 16808478 PCT
Lal7g1079 7 16805261 16806910 Lal17g1540 17 16806820 16808478 PCT
Lal19g1224 19 15560960 15562618 Lal17g1540 17 16806820 16808478 PCT
Lal17g1540 17 16806820 16808478 Lal14g1678 14 16985044 16986705 PCT
Lal17g1540 17 16806820 16808478 Lal7g1079 7 16805261 16806910 PCT
Lal17g1540 17 16806820 16808478 Lal19g1224 19 15560960 15562618 PCT