Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0878 ATGAGCAATGGGGAGCTTCTCAGCATCGAACCTCTCGAACTCAAGTTTCCATTTGAGTTGAAGAAGCAGATCTCGTGTTCTCTTCAATTATCAAATAAGACCGATAGCTATGTAGCTTTCAAGGTGAAAACAACCAATCCCAAGAAGTATTGTGTTCGTCCAAATAACGGAATTGTCATGCCGCGTTCTATGTGTGATGTTATGGTTACCATGCAAGCACAAAGAGAAGCTCCAGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGTGTAAAAACTTATGATGGTGCAAGCCCAAAGGATATCTCTGCAGATATGTTCAACAAGGAGGCGGGGCACGTGGTTGAAGAGTGCAAATTGAGAGTGCTGTATGTTTCACCACCTCGACCACCATCTCCAGTCGCAGAAGGTTCAGAGGAGGGGTCATCGCCTAGAGGTTCGGTTTCAGAAAATGGAACCGTCAATGGTTCTGACTTCGCACAACCTTTGCAGGTAGCAAAAGGATTTACTGAACGACCGGAGGCTCTAGAAAAATCTGCAGAGGCAAGAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAATAGCAAACTCCGTCAGGAACTGGATCTGCTAAAGCGTGAAGGCAACAAAAATCGTGGTGGAGTCTCGTTTGCCCTTGTCATATTCATTGGATTACTTGGCATAATTATGGGGTATCTCATGAAGAGGACTTAA 735 0.4381 MSNGELLSIEPLELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNNGIVMPRSMCDVMVTMQAQREAPADMQCKDKFLLQSVKTYDGASPKDISADMFNKEAGHVVEECKLRVLYVSPPRPPSPVAEGSEEGSSPRGSVSENGTVNGSDFAQPLQVAKGFTERPEALEKSAEARALISRLTEEKNNAIQQNSKLRQELDLLKREGNKNRGGVSFALVIFIGLLGIIMGYLMKRT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0878 244 Gene3D Immunoglobulins 2 130 IPR013783 -
Lal15g0878 244 Coils Coil 180 214 - -
Lal15g0878 244 MobiDBLite consensus disorder prediction 128 159 - -
Lal15g0878 244 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Lal15g0878 244 SUPERFAMILY PapD-like 2 141 IPR008962 -
Lal15g0878 244 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Lal15g0878 244 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 242 - -
Lal15g0878 244 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 242 IPR016763 GO:0005789
Lal15g0878 244 MobiDBLite consensus disorder prediction 143 159 - -
Lal15g0878 244 PIRSF VAMP_assoc_prot 1 243 IPR016763 GO:0005789
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0878 Lal-Chr15 6613177 6617095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0878 - - lang:109330584 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0878 15 6613177 6617095 Lal15g0878 15 6613177 6617095 ECH
Lal16g0329 16 1977852 1981686 Lal15g0878 15 6613177 6617095 LSH
Lal15g0878 15 6613177 6617095 Lal23g0722 23 9841408 9845456 LSH
Lal16g0329 16 1977852 1981686 Lal15g0878 15 6613177 6617095 PCT
Lal15g0878 15 6613177 6617095 Lal15g0878 15 6613177 6617095 PCT
Lal15g0878 15 6613177 6617095 Lal23g0722 23 9841408 9845456 PCT
Lal15g0878 15 6613177 6617095 Lal15g0241 15 1657953 1661626 PCT
Lal15g0878 15 6613177 6617095 Lal23g1240 23 13581634 13585528 PCT