Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1240 ATGACTGCTTCTTCTGCAAATCAACTTATCTCTATTAGTCCTGATGAACTCAGGTTTCATTTTGAGCTGGACAGGCAAACATTTTGTGATCTTAAAGTTGCGAATAATACAGAGAGCCATGTTGCATTCAAGGTCAAAACCACTTCCCCGAAGAAGTACTTTGTACGACCGAACACTGGTGTTATACAGCCCTGGGACTCTTGTATCATTAGAGTCACCCTCCAAGCCCAACGTGAATACCCTCCAGACATGCAATGCAAAGACAAGTTTCTCTTGCAGAGTACTGTAGTGAGTCAAAATATTGATGTTGATGATCTCCCACCAGATACTTTTAGTAAGGAAAGTGGAAATACAATAGAGGAGTTGAAACTAAGAGTTGCATATATCTCTCCTAACTCACCCCAAGGAAGCTCCGAAGATGATGTATTGAAGAACTCACAAAAACTTGATGCGTCTTCTGTTTTACAGCACCTGAAGGAAGAAAGAGATGCTGCTGCTAGGCAAACGCGACAACTGCAGCAGGAACTGGACATTATGAAAAGGCGAAGAAGCCGAAGTAATACAGGGTTTTCCTTCACCTTCGCCATTTTTGTTGGTGCCATTGGAATTTTGCTTGGCTTTCTTTTGAAACTTATATTCTCTTCCCCATCTACAGAATGA 660 0.4167 MTASSANQLISISPDELRFHFELDRQTFCDLKVANNTESHVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTVVSQNIDVDDLPPDTFSKESGNTIEELKLRVAYISPNSPQGSSEDDVLKNSQKLDASSVLQHLKEERDAAARQTRQLQQELDIMKRRRSRSNTGFSFTFAIFVGAIGILLGFLLKLIFSSPSTE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1240 219 Coils Coil 155 182 - -
Lal23g1240 219 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 4 216 IPR016763 GO:0005789
Lal23g1240 219 ProSiteProfiles Major sperm protein (MSP) domain profile. 9 129 IPR000535 -
Lal23g1240 219 PIRSF VAMP_assoc_prot 2 153 IPR016763 GO:0005789
Lal23g1240 219 PIRSF VAMP_assoc_prot 132 211 IPR016763 GO:0005789
Lal23g1240 219 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 4 216 - -
Lal23g1240 219 Pfam MSP (Major sperm protein) domain 10 104 IPR000535 -
Lal23g1240 219 SUPERFAMILY PapD-like 5 138 IPR008962 -
Lal23g1240 219 Gene3D Immunoglobulins 2 133 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1240 Lal-Chr23 13581634 13585528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1240 - - gmx:100794270 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0241 15 1657953 1661626 Lal23g1240 23 13581634 13585528 LSH
Lal15g0878 15 6613177 6617095 Lal23g1240 23 13581634 13585528 PCT
Lal23g0722 23 9841408 9845456 Lal23g1240 23 13581634 13585528 PCT