Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0241 ATGACTGCTTCTTCTGCAAATCAACTTATCTCTATTAGTCCTGATGAACTTAGGTTCCAACTGATTGCCATAATATTCATTTGTGTAACAGTTGAGCTGGACAAGCAAACATTTTGTGATCTTAAAGTTGCAAATAACACAGAAAGCTATGTTGCTTTCAAGGTCAAAACCACTTCACCTAAGAAATACTTTGTAAGACCAAACACTGGTGTTATACAGCCCTGGGACTCTTGTATCATCAGAGTCACCCTCCAAGCCCAACGTGAATACCCTGCAGACATGCAATGCAAAGACAAGTTTCTCTTGCAGAGTACTATAGTTGATTCAAATACTGATGTTGATGAGCTCCCACCAGATACTTTTACTAAGGAAAGTGGAAATATAATAGAGGAGTTGAAACTAAGAGTTTCATATATTTCTCCTAACTCACCTCAAGGAAGCTCTGAAGATGATGCATTGAAGAACTCCTCACAAAAACTTGATGCCTCTTCTAGTGAGGCTTTACAGCACTTGAAGGAAGATAGAGATGCCGCTGCTAGACAAACGCGACAACTGCAACAAGAACTGGACATGGTTAAAAGGCGAAGGAGCCGAAGTGATCCTGGGTTTTCCTTCACTTTTGCCATTTTTGTGGGTATCATTGGAATTTTGCTTGGCTTTCTTTTGAAACTTATATTCTCTTCACCATCTACACAATGA 699 0.3963 MTASSANQLISISPDELRFQLIAIIFICVTVELDKQTFCDLKVANNTESYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQAQREYPADMQCKDKFLLQSTIVDSNTDVDELPPDTFTKESGNIIEELKLRVSYISPNSPQGSSEDDALKNSSQKLDASSSEALQHLKEDRDAAARQTRQLQQELDMVKRRRSRSDPGFSFTFAIFVGIIGILLGFLLKLIFSSPSTQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0241 232 ProSiteProfiles Major sperm protein (MSP) domain profile. 9 139 IPR000535 -
Lal15g0241 232 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 4 229 IPR016763 GO:0005789
Lal15g0241 232 SUPERFAMILY PapD-like 5 150 IPR008962 -
Lal15g0241 232 Coils Coil 168 195 - -
Lal15g0241 232 Gene3D Immunoglobulins 2 143 IPR013783 -
Lal15g0241 232 MobiDBLite consensus disorder prediction 140 159 - -
Lal15g0241 232 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 4 229 - -
Lal15g0241 232 Pfam MSP (Major sperm protein) domain 31 116 IPR000535 -
Lal15g0241 232 PIRSF VAMP_assoc_prot 2 167 IPR016763 GO:0005789
Lal15g0241 232 PIRSF VAMP_assoc_prot 143 224 IPR016763 GO:0005789
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0241 Lal-Chr15 1657953 1661626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0241 - - aprc:113869624 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0241 15 1657953 1661626 Lal23g1240 23 13581634 13585528 LSH
Lal15g0878 15 6613177 6617095 Lal15g0241 15 1657953 1661626 PCT
Lal23g0722 23 9841408 9845456 Lal15g0241 15 1657953 1661626 PCT