Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1344 ATGAGAACAGGAAACTGTGCTATGCAACAAGGCCTAACAGCAGAGGCAGCAAGCATAGTGAAGCAAGCAGTAACACTTGCAAAGCGTCGCGGCCATGCTCAGGTGACTCCACTCCACGTAGCAAACACCATGCTTTCTGTTACCAATGGCCTATTGAGAACTGCTTGTCTTCAATCTCATTCTCACCCTCTCCAGTGCAAGGCCTTGGAGCTTTGTTTCAACGTGGCTCTCAATCGATTGCCAGCATCAACTTCTAGCCCCATGTTGGGTACAAATCATCATCACTCTCAGTGTCCTTCAATATCGAACGCCTTGGTTGCTGCGTTCAAGCGCGCTCAGGCGCACCAGCGCCGCGGATCCATTGAGAATCAGCAACAGCCACTCTTGGCAGTGAAGATAGAGCTTGATCAGCTCATAATTTCAATCTTAGATGATCCTAGTGTTAGCAGAGTCATGAGAGAGGCTAGTTTCTCTAGTACTCAAGTGAAAAGTAATGTTGAACAAGCTGTGTCTTTGGAAATATGCTCTCAGAACAATAATAACCCATCACCTGTAACTAGTAGCAAGTCAAAGGATCAAATCAGTAATAGTCACTCTCTTTCTTCTCATCCAGATGGAGAGAACTTACTCAATAAAACAACTGTGCCTAATCAGATTAGGGTTGAGGACATCATAAGTGTCATAGATGATTTTGTGAGTCAAAGTAGGAGAAGCACTGTGATTGTTGGTGAGTGTCTAGCTACTCTTGAAGGTGTAGTTAGAGAAGTGATAGATAAGGTTGATAAAGGAGATGTTGGTGAGTCTCTTAGAGGTATTAAGTTTAAATCTCTTTCCCTTTCATCCTTTGTCCATGTTTCTAGAGTTGAGGTTGAACAAAAAATTGAAGAGCTTAAGAGCCTTGTAAATTTGGCCTCTCATGGAAAAGGGTATATATTGTATCTTGGAGATCTCAAATGGGTATTTGATTACCATTCTAGCCATCAGCAACAAGGGAGAATGGTGTATAATTACTCTCCTATGGATCACATGATCATGGAGATTGGAAAGTTGGTGAGTGGGGTTGGAGAGAGTGGAAGGTTTTGGTTGATGGGTTTTGCAACTTTCCAAGCTTACATGAGATGCAAAATTGGCCAGCCATCAATGGAGACTCTTTGGGATCTTCATCCTATTACTATTCCTGCCGGAAGCTTGTGCTTGAGTCTCATCCCTGACAGTGGTGTACAAAATCAGACCACAAACAAAAACGCTGAGAGTAGAACAAGCTGGTTATTACACGAAGGAGTGGGTGATGATAAGGAACAACCAGCTTGTGTTGCAGAACCTTCATCAAAATTTGAGACTGAAGATAGAGTCTTGCAAAGTAGTGTTTGTAACAGTGATTCCTCAAGTTCAAGCCTTCCTGCATGGCTCCAACAGTACAAAAATCAGAATCGACGAGTGATCTCTAGTGACCAGAATTCCGTCCCAGTGGGAGAGCTTTGCAACAGGTGGAACTCAATGTGTAGTTCAATCCAAAAACAACATTATCCTTCAGAAAAAACCCTCACATTATCCTCAGCATCACCATCTTCATCCACCTCAGCTTTCTCCTATGAACAGCAACATTCTCATTACTTGCATGTTGTTGCTGAACCAACTTTGCGAGTATACATCCCAGACAATAAAGATACTGCTAAGAAACCATTCTCATCATCGAATCTTAGCTCCAAACCTAACTCCACTTCTTCAAGCGATGTCATGGAAATGGAGTACGTACGCAAGTTCAAAGAGCTTAATTCTGAGAACCTAAAAACTTTGTGCAACGCTTTAGAGAAAAAAGTTCCGTGGCAGAAAGATATAATACCGCAAATCGTGACCACCATTTTGCAATGTCGTTCAGGCATGCTAAGAAGAAAAGGGAAAGTGAGAAGCAATGAGGTGATGAAAGAAGAAACATGGTTGTTTTTCCAAGGTGTTGATATGGAAGGTAAAGAGAAAATAGCAAGAGAATTGGCTAGGGTTATTTTTGGGTCCCACAGGAACTTCATATCTATACCTTTAAGCAGTTTTGCATCAACAAGAGCTGATTCAACTGAGGATTTCAGAAACAAAAGATCAAGAGATGAAACAAGTTGCAGTTACAGTGAGAGGTTCGCGGATGCAGTCTCTATTAATCCTCATAGGGTGTTTCTAATTGAGGACATAGAACAAGCAGATTATTGTTCTCAACTTGGTTTTAAAAGAGCTATTGAGATTGGAAGAGTTTCAGATTCGAATGGCGAAGAAGTTGATCTTTGTGACGCTATCATCATTCTCAGCTGTGAAAGTTTCAGTTCTAGGTCAAGAGCTTGTTCTCCTTCAATGAAGCAAAAATCTTATGAAGAAGGTTCACAAGAAGAAAAAGAAATTAATATTGCTACGTTGGAGGAGACAAGCCCTTGTGTTTCATTGGATTTGAATATTTCCATTGATGATGAGTGTGACGAGGAAAGGTTGGTAGATGATATTGGACTTCTTGAATCTGTAGACAGAAAGATTATCTTCAAAATTCAGGAATTATGA 2541 0.4109 MRTGNCAMQQGLTAEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSVTNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSPMLGTNHHHSQCPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELDQLIISILDDPSVSRVMREASFSSTQVKSNVEQAVSLEICSQNNNNPSPVTSSKSKDQISNSHSLSSHPDGENLLNKTTVPNQIRVEDIISVIDDFVSQSRRSTVIVGECLATLEGVVREVIDKVDKGDVGESLRGIKFKSLSLSSFVHVSRVEVEQKIEELKSLVNLASHGKGYILYLGDLKWVFDYHSSHQQQGRMVYNYSPMDHMIMEIGKLVSGVGESGRFWLMGFATFQAYMRCKIGQPSMETLWDLHPITIPAGSLCLSLIPDSGVQNQTTNKNAESRTSWLLHEGVGDDKEQPACVAEPSSKFETEDRVLQSSVCNSDSSSSSLPAWLQQYKNQNRRVISSDQNSVPVGELCNRWNSMCSSIQKQHYPSEKTLTLSSASPSSSTSAFSYEQQHSHYLHVVAEPTLRVYIPDNKDTAKKPFSSSNLSSKPNSTSSSDVMEMEYVRKFKELNSENLKTLCNALEKKVPWQKDIIPQIVTTILQCRSGMLRRKGKVRSNEVMKEETWLFFQGVDMEGKEKIARELARVIFGSHRNFISIPLSSFASTRADSTEDFRNKRSRDETSCSYSERFADAVSINPHRVFLIEDIEQADYCSQLGFKRAIEIGRVSDSNGEEVDLCDAIIILSCESFSSRSRACSPSMKQKSYEEGSQEEKEINIATLEETSPCVSLDLNISIDDECDEERLVDDIGLLESVDRKIIFKIQEL 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1344 846 Gene3D - 9 171 IPR036628 -
Lal13g1344 846 Gene3D - 574 808 IPR027417 -
Lal13g1344 846 SUPERFAMILY Double Clp-N motif 12 164 IPR036628 -
Lal13g1344 846 ProSiteProfiles Clp repeat (R) domain profile. 8 173 IPR004176 -
Lal13g1344 846 PANTHER PROTEIN SMAX1-LIKE 3 1 845 - -
Lal13g1344 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 769 IPR027417 -
Lal13g1344 846 MobiDBLite consensus disorder prediction 176 211 - -
Lal13g1344 846 MobiDBLite consensus disorder prediction 559 578 - -
Lal13g1344 846 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1344 Lal-Chr13 12519324 12523956 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1344 - - var:108320189 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1344 13 12519324 12523956 Lal4g1580 4 19995740 20000179 ECH
Lal13g1344 13 12519324 12523956 Lal13g1344 13 12519324 12523956 ECH
Lal13g1344 13 12519324 12523956 Lal22g0357 22 2298471 2304339 ECH
Lal13g1344 13 12519324 12523956 Lal5g0948 5 11517168 11525005 ECH
Lal13g1344 13 12519324 12523956 Lal1g0986 1 7561208 7564265 LSH