Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0986 ATGAGAACAGGAATATGTAGTATTCAGCTTCAGGCTTTGACACCAGAGGCTGCAAATATTGTGAAACAAGCTCTTAATCTTGCAACAAGAAGGGGTCATCCACAAGTGACTCCTCTTCATGTTGCTAGTGCTATGCTTTCAACCTCAACAGGAATTCTAAGAAGAGCTTGCCTTCAATGCCATTCTCACCCTCTCCAATACAAGGCACTAGAGCTTTGCTTCAATGTTTCCCTTAACCGTTTGCCAGCATCCACATCAAGCCCTCTTTTGAGTCCTCAATATTCCACCACTCCTTCACTTTCCAATGCCTTGGTTGCTGCTTTCAAAAGGGCTCAGGCTCACCAACGTCGCGGCGGTGGAAGTATTGAGAGCCAGCAGCAACCTATTCTGGCCTTGAAAATTGAGGTGGAACAACTTATATTGTCTATCTTGGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGTTTCTCTAGCACCCTTGTTAAAACCAAGGTTGAACAAGCTGTTTCACTTGATGTTTGTTCACAACAACCTCCTCCTAGAAACCATAATGATCATTGCACCAAGTCTCAAGTTCTTGATGATAGTAACATCAATCTGTCCTCATCTTTATCTTTTGGACAATTTGGAGGCTCATCTATAGAAACTATAGACCATGTTAATAATGATGTAACTAATGCTTTGAGTGAATTTGTGATGAGAAAAAGAAACATTGTTATTTTAGGGGAGAATAATGCAAATGCTGAGAGGGTAGTTAAGGGAGTGATGGAGAGGTTTGAGAAGGGAAATGTTCCAAGAGAGTTGAGGTATGTGCAGCTTGTGAGTCTTCCTCTCATCTCCTTCAGGAACCTTAGCAAAGAGGAAGTTGAAAAGAAGCTTGTAGAGCTTAGAAGACTAGTGAAAAGCTATGTAGGAAGAGGGTTTATTCTCTACTTGGGTGATCTTAAATGGTTGTTTGAGTTTTGGTCATTTTATTGTGAACAAAGGACACACTACTACTGTTCTGTGGAGCATATGGTCATGGAGCTTAAAAAATTGGTCAGTGGAAATGGTGATAATGGTAAAGTGTGGCTTATGGGGATTGCAACTTTCAGAACATACATGAAATGCAAAATATGTCACCCTTCCCTAGAAACTATTTGGGAACTTCATCCATTCACAATTCATGTTGGAAACCTGAGCCTTAGTTTAAAACTGTATAGTGATTTTCAAGATCAGGAGAGAAGCAATGTAATATTCAAGGATGAATATTTTGAAGATAGGGCCAAAGTGAGAAAGCATCTAACTTGCTGCAGAGATTGCTCATTGAATTTTGAAAAAGAAGCTTACAATATGAACAAGAAAGAGTGCACTAATAATTTGCCATCATGGCTCAAAAATTGCAAGCAAGAGAGAAATGACATAATAGAAGATCAGGAAAAATCAAGGCTTGTGGATATCTGCAAGAAATGGAACTCATTTTGCAGTTCAATGCATGGACATGCTTCTCTTGAGAAACAAATTTTTCTTGTTTCATCTTCTCCTTCATCCCCTACTTCTGTCTCTTTACATGAGAGAAAGTCTAACTTGGGTTTTAGCCACCTAAATTGGCCAATCATTTCTGAACCAAAACAAGTACCAAAAGAATATGAAGACTTATGCACAGAAACTGTTGTTGGTGATTGCTGTGAAGGAAAACTAATAATGTTCATGCCTGAAAGAAATGTCCCTAAACCAGATCTTTTTTCAAATCCTAACTCTAGCCCAAACTCAGCTTATTCAAGTGAGGAAGTGGATGGTTTAGATAGCACTCAAATGTTCAAGGAACATAATGAAGATAATCTCAAGATTCTATGTGATGCCTTGGAGAACAAGGCACCACAACATAAAGAAATTGTTAAGGAGATTGTAAGCACTGTCCTTCTTTGCAGATCAGGAATGAGAAAAGGAAATAACTACTTCCTGAAGAGAGAAGATAAGCAAGAAACTTGGATGTTCTTTCTAGGTGTTGGTTCTGAAGCCAAAGGGGTCATCTCAAAAGAACTAGCTAAAGTTGTTTTTGGCTCTTATAGTAACTTTGTCTCAATTGGTATGAACAGTTTTTCTTCCCTAAGAGATAATGAATCCAAAAATAAAAGACCAAGAAATGAGTTTGGCAGCAGTTATCTGCAAAGGTTTGGTGAAGCAGTGAATGAGAATCCTCATAGAGTGTTCTTCATGGAAGATTTGGACCAAGTTGATAACTTCTCTCAAAAGGGTATCATGCAAGCTATTGAAAATGGAAGTATAACCCTTCCTTGTGGTGAATATGCTCCTCTCAAAGATGCCATTGTTATTTTCAGTTGTGAAAGCTTCAGTTCAGTGTCAAGAGCTTGTTCTCCAGCCAAAAAGTCTCAATCTGATGTAAACAAAAGGGAAGAGAATAATCATAACTTGGAGGAGAAAAATGCATGCATATCTTTGGATCTGAATATAGCCATTGAAGTTGATAGCACAAATGTGCATGTAGATGGAGATACTGAGATCTTAGAGTTAGTTGATAAGCAAATTAATTTTAACATGCATTAA 2553 0.3839 MRTGICSIQLQALTPEAANIVKQALNLATRRGHPQVTPLHVASAMLSTSTGILRRACLQCHSHPLQYKALELCFNVSLNRLPASTSSPLLSPQYSTTPSLSNALVAAFKRAQAHQRRGGGSIESQQQPILALKIEVEQLILSILDDPSVSRVMREAGFSSTLVKTKVEQAVSLDVCSQQPPPRNHNDHCTKSQVLDDSNINLSSSLSFGQFGGSSIETIDHVNNDVTNALSEFVMRKRNIVILGENNANAERVVKGVMERFEKGNVPRELRYVQLVSLPLISFRNLSKEEVEKKLVELRRLVKSYVGRGFILYLGDLKWLFEFWSFYCEQRTHYYCSVEHMVMELKKLVSGNGDNGKVWLMGIATFRTYMKCKICHPSLETIWELHPFTIHVGNLSLSLKLYSDFQDQERSNVIFKDEYFEDRAKVRKHLTCCRDCSLNFEKEAYNMNKKECTNNLPSWLKNCKQERNDIIEDQEKSRLVDICKKWNSFCSSMHGHASLEKQIFLVSSSPSSPTSVSLHERKSNLGFSHLNWPIISEPKQVPKEYEDLCTETVVGDCCEGKLIMFMPERNVPKPDLFSNPNSSPNSAYSSEEVDGLDSTQMFKEHNEDNLKILCDALENKAPQHKEIVKEIVSTVLLCRSGMRKGNNYFLKREDKQETWMFFLGVGSEAKGVISKELAKVVFGSYSNFVSIGMNSFSSLRDNESKNKRPRNEFGSSYLQRFGEAVNENPHRVFFMEDLDQVDNFSQKGIMQAIENGSITLPCGEYAPLKDAIVIFSCESFSSVSRACSPAKKSQSDVNKREENNHNLEEKNACISLDLNIAIEVDSTNVHVDGDTEILELVDKQINFNMH 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0986 850 Pfam Clp amino terminal domain, pathogenicity island component 24 56 IPR004176 -
Lal1g0986 850 Pfam Clp amino terminal domain, pathogenicity island component 134 171 IPR004176 -
Lal1g0986 850 ProSiteProfiles Clp repeat (R) domain profile. 10 174 IPR004176 -
Lal1g0986 850 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 849 - -
Lal1g0986 850 Coils Coil 790 810 - -
Lal1g0986 850 SUPERFAMILY Double Clp-N motif 13 166 IPR036628 -
Lal1g0986 850 Gene3D - 9 172 IPR036628 -
Lal1g0986 850 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 849 - -
Lal1g0986 850 Coils Coil 288 308 - -
Lal1g0986 850 Gene3D - 590 828 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0986 Lal-Chr1 7561208 7564265 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0986 - - aprc:113871449 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1344 13 12519324 12523956 Lal1g0986 1 7561208 7564265 LSH