Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0948 ATGCCAACGCCGGTAAGCGTAGCGAAGCAATGTTTAAAAGAGGATGCAGCACGTGCACTCGACGATGCGGTAACGGTGGCTCGGCGCCGAAACCACGCTCAAACAACGTCGCTACACGTGGTCTCCGCCCTCCTGGCTCTCCCCTCCGCCACGCTCCGCGACGCCTGCGCACGTGCCCGAAGCCGCTCCTACTCGCAGCGCCTCCAGTTCCGTGCCCTGGAGCTCTCCGTCGGCGTCTCCCTCGACCGCCTCCAGACTATGAAGACATCCTCTTCTGTGAACGGTGGCGCCGACGATGGTCCTCCTCTGTCGAACTCTCTCATGGCCGCCATAAGAAGATCACAGGCCAACCAGCGCCGCCAACCGGAGAATTTCCACTTGCTACAAATGATGCAGCACCAGCAACTAGGCACGATGTCGTTTTTGAAAGTGGAGTTGAAGCACTTCATGCTTTCCATTCTTGATGACCCTATAGTGGGTAGGGTTTTTTCTGAAGCAGGTTTTCGAAGCTATGATATCAAACTCGCACTTCTTCAACCACCTTTACCTTCTTCTTCTTCTAGATTCTTCTCTCGACCGGTTTTTCTATGCAACCTGGAACCGGTTCAAACCGGTTTAACCTTCTTGGACGATAATAGCAAAAGGATAGTAGATGTTCTTTTAAGGAAGAACCAGAGAAACCCGCTTTTGATGGGTGTTTATGCAAAAAGTGCTCTTAAGAGTTTCATTGAAACAGTGCGTATCAGGAGAGTTTTGTTGCCTAGTAAACTTGCTGGGTTGAGTGTGGTTTGTGTTGAAAAGGAGATTGTTGAATTCTTAAGTGGGAGTGAGGAGAATATGGAGTTGAAGTTTAAGGAGGTGAGTTATTTGGTGGAACAATGTAAGGGTGGTGGTGGTGGTGGTGTTGCTGTTAATTTTGGGGAGATTGAGGTTTTTGTTGGTGATGGTGTTGGGTTTGTGGTGGAACAGTTGAAGAGGTTGTTGGAGGTTCGTGATGGGAAGGTTTGGTTGATAGGAGTGGCGGGAACCTCTGATGCTTATTCTAAGTTTTTAGGTTTATTTCCAACCGTTGATAAAGATTGGGATCTACAACTCTTGACCATGACTTCTGCCACAACTTCCATGGAAGGACTCTACTCTAAGTCCAACTTGATGGGGTCCTTTGTTCCATTTGGTGGTTTCTTTTCTACACCCTCTGAGTTCAAAAGTCCCATAAGCTGTACAACAAATGCATCTTTAACTCGTTGTGACACATGCAATGAAAAGTATGAACAGGAAGTTGCTGATTTTCTGAAGTTAGATCCTGCTACTTCAGCAAAATGTAGTCACTCAACAACCTTGCCTTGGTTACAAAAAGTTAATGTGGATTCAGATAGAGGACTGGATGTAGCAAAGAGGACTGAAGAAAACACAAGTTCAAATGCTAAGATCTTCGGATTGCAAAAGAAATGGAATTGTATTTGTCAACGTCTTCATAACAATGAATCATTACCTGTATTTGATACTCAACAAACAAGGTTCCAAGCTCCATCACTTGAGAGGTTTCCATTTGGTTCAGGTTTTAAGGAAAGTAGCAGGCAAGGTCTATCTCTTCATGAAATCCAATGTTCAAATCAGATTTCCAACATTTCTGAAGAGTTACAAAGTACATTGCCATCGAAATCGACATTACCGGTTTCAGTACCTTCGGATACTGGTAGTATAAGCATTGAAGCTGACCATGTTCCTAGATTTTCGAAAACATCGCTAAGTGACTTGAGGACTCATTGGATTTCACCTTATCCTAAGGACAATATGAATTTGCTTGATCAGAAATCGTCTTCAACCGATACTCCTGTAACCACAGATTTGGGATTGGGAACTATATATACCTCAGCTGCTCATGAGCCAGATACTCCAAAACTATGTGATCATAAAAAGCGTCCTCAGCACTTGTCAGATTCCATTTCAATTGATTTTGATGCGACGAATGAGAATACTTCACACCAAATTGCTAGATCATCTTCCTGCTCTGGTCCAAATTTGGAATTAAAATTCGACTCGGAAGATTTCAAGTCACTTTATCAAATTCTCACTGAGAAGGTTGGATGGCAAGATGAGGCCATATATGTTATCAATCGAACTATATCCCTTTGTAGATCTGGCGCAGGACAGCGTAGTGACTCGCATGTTAGAGCAGACATATGGCTTGCTTTCCTCGGACCGGATAGACTTGGAAAAAGGAAAATTGCTTCAGCTCTTGCCGAGATTTTATTTGGTAACAAAGAAAGCCTAATATCGGTGGATTTGAGCTCCCAGGACAGCTTTTATCGGTTAAACTCGGTTTTTGAATTCCAAAATTCATATAGTCATGATATGCTTAGGAGGAAGATTTGTGTGGACTACATTGCTGGGGAGTTGAGTAAAAAGCCTAATTCAGTTGTCTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGCTGCAGAGTAGTTTGTTCAAAGCTATAAGAACAGGTAGATTTCCATACTCACTGGGAAGAGAAATCAGCATCAACAACGCAATCTTTATTGTAACATCAACTTTATTTAAAGGCGATGGCTCATTTGTTTCGGATGAGCCTAAAATGTTTCCCGAGGAAAGAATCCTGGAGGCCAAAAGATTTCACATGAAGTTATCAATTAGGCATGCATCTGAGGATGCCGAAAGAATCGGTAGCACAAATGTGATGGTTGCACCAAGAAATGGTACCTCCAAACCATCATTTCTGAATAAAAGAAAGCTAGTTGAAAGTATTGACTCCAAAGAGAAAGAAACATGCAAGACACCAAAGCAGGTCAAGGAAGCATTAAGGTCATATCTGGATCTAAATATGCCTCTGGACGAGGATGACGAGGCCATCAATTACAATCGTCACGAAACTGAGTCCTTAGTTGAAAAATCTGCAGGCTGGTTAAAGGATTTCTGTGATCAAATAGATGGAAAAGTGATTTTTAAGTCATTTAATTTTGACTTGCTTGCCGAGCAAGTAGTAAAAAGCATTGACATAGAATTTCAGAGGTCATTTGGATCTGAGGTTGTGCTTGAAATCGAATTCGAGGTCATGGCGCAGATACTCGCCGCAGCTTGGTTATCAGAGAAGAAAAATTCGATGCAGGATTGGGTCGAGCGTGTTCTTGGCAGAAGCTTCAATGAATTCCAACACAAGTACCACCCTGCAACTCATCATGTCATTAAACTGGTTAAGTGTGAATGCACTTTTATTGAAGAGCATGCTCTTGGAGTATGCCTTCTACCTCTGATTAACTTCAACTAA 3291 0.4275 MPTPVSVAKQCLKEDAARALDDAVTVARRRNHAQTTSLHVVSALLALPSATLRDACARARSRSYSQRLQFRALELSVGVSLDRLQTMKTSSSVNGGADDGPPLSNSLMAAIRRSQANQRRQPENFHLLQMMQHQQLGTMSFLKVELKHFMLSILDDPIVGRVFSEAGFRSYDIKLALLQPPLPSSSSRFFSRPVFLCNLEPVQTGLTFLDDNSKRIVDVLLRKNQRNPLLMGVYAKSALKSFIETVRIRRVLLPSKLAGLSVVCVEKEIVEFLSGSEENMELKFKEVSYLVEQCKGGGGGGVAVNFGEIEVFVGDGVGFVVEQLKRLLEVRDGKVWLIGVAGTSDAYSKFLGLFPTVDKDWDLQLLTMTSATTSMEGLYSKSNLMGSFVPFGGFFSTPSEFKSPISCTTNASLTRCDTCNEKYEQEVADFLKLDPATSAKCSHSTTLPWLQKVNVDSDRGLDVAKRTEENTSSNAKIFGLQKKWNCICQRLHNNESLPVFDTQQTRFQAPSLERFPFGSGFKESSRQGLSLHEIQCSNQISNISEELQSTLPSKSTLPVSVPSDTGSISIEADHVPRFSKTSLSDLRTHWISPYPKDNMNLLDQKSSSTDTPVTTDLGLGTIYTSAAHEPDTPKLCDHKKRPQHLSDSISIDFDATNENTSHQIARSSSCSGPNLELKFDSEDFKSLYQILTEKVGWQDEAIYVINRTISLCRSGAGQRSDSHVRADIWLAFLGPDRLGKRKIASALAEILFGNKESLISVDLSSQDSFYRLNSVFEFQNSYSHDMLRRKICVDYIAGELSKKPNSVVFLENVDKADFLLQSSLFKAIRTGRFPYSLGREISINNAIFIVTSTLFKGDGSFVSDEPKMFPEERILEAKRFHMKLSIRHASEDAERIGSTNVMVAPRNGTSKPSFLNKRKLVESIDSKEKETCKTPKQVKEALRSYLDLNMPLDEDDEAINYNRHETESLVEKSAGWLKDFCDQIDGKVIFKSFNFDLLAEQVVKSIDIEFQRSFGSEVVLEIEFEVMAQILAAAWLSEKKNSMQDWVERVLGRSFNEFQHKYHPATHHVIKLVKCECTFIEEHALGVCLLPLINFN 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0948 1096 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1095 - -
Lal5g0948 1096 Gene3D - 10 179 IPR036628 -
Lal5g0948 1096 ProSiteProfiles Clp repeat (R) domain profile. 7 184 IPR004176 -
Lal5g0948 1096 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1095 - -
Lal5g0948 1096 Pfam Clp amino terminal domain, pathogenicity island component 23 46 IPR004176 -
Lal5g0948 1096 Pfam Clp amino terminal domain, pathogenicity island component 146 178 IPR004176 -
Lal5g0948 1096 Gene3D - 656 915 IPR027417 -
Lal5g0948 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 854 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0948 Lal-Chr5 11517168 11525005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0948 - - gmx:100776148 1408.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0948 5 11517168 11525005 Lal5g0948 5 11517168 11525005 ECH
Lal5g0948 5 11517168 11525005 Lal4g1580 4 19995740 20000179 ECH
Lal13g1344 13 12519324 12523956 Lal5g0948 5 11517168 11525005 ECH
Lal5g0948 5 11517168 11525005 Lal22g0357 22 2298471 2304339 PCT
Lal22g0357 22 2298471 2304339 Lal5g0948 5 11517168 11525005 PCT