Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1580 ATGCCAACGCCGGTATCATCAGCCAGGCAATGCTTAACCGAAGACGCATCTCTCGCCCTCGACGAAGCCGTCTCCGTCGCCCGCCGCCGTGGCCACTCCCAAACCACCTCTCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCTTCCTCCTCCCTCCTCCGCGACGCATGCTCCCGCAACTCCACCTACTCCCTCCGCCTCCAATTCAAAGCCCTCGATCTCTCCCTCTCCGTCTCCCTCGACCGCACCCCTTCCACCACCACCACCACCACCGTAACGGAACCACCGATATCGAATTCACTCATGGCTGCTATTAAACGCTCTCAAGCTAATCAACGACGCAACCCTCATAACTTTCATCTTTATCATAACGGTAATAACAGTAGCCATCAAAACGCACCGTTTAGTGTTTCTGCTTTGAAAGTTGAGCTTCGTCATTTCGTTTTGTCTATTTTGGATGACCCGGTTGTGAGTCGGGTTTTCTCTGAAGCGGGTTTTCGGAGCTCCGAAATTAAGCTTGCTATCATGCGCCCTCTTCGCTATCGTGCGCCACCTCTTTTCCTTTGTAACCTCCCTCCGCCGGAGCGAAACTTCTCTCCGCCGTCGCCGCTGCCATGCCGGAGCTTCTTTAATTTCCCGTTCTCCGGTGATCCCGAAGCGGAGAATTTCAAGAGCATTGGGGAAGTTCTTGCTCGGGGTAAGGGGAAAAACCCGATCCTTCTCGGCGCGTGTGCGAAGGACGCGCTGAAAAGCTTCGTTGAATCAACGGAGATAGAAAAGGAATTGCCTTTGGAACTGTGTGGCTTGAAAATGTTAAGTGTTGAAAACGACGTCGTTGAGCTTTGTACTGGGAACTGTGGAATTGAGGTTTTAAAGAAGAAATTTGAAGAAATTGAGTTAATTGTGGACAAAAATGTGGGACCCGGTGTAGTAGTGAATTTTGGGGATTTGAAGGGTTTTATTCTGAATGATAATAACAATAATCTAATAGGGTATGTGGTTGAAGAATTGGGTAAATTGTTGAAGGTTCATAGTAACAAGTTATGGTTAATGGGTGCAGTAGCTAGTTATGAGATTTACATGAAATTTGTGGGAATGTTTCCTTCTGTGGATAAAGATTGGAACTTGCAACTTCTACCTATCACTTCTCTTCAATCATATCAGAGGCCAAGGTCAAGTTTGTTGAATTCATTTGTACCCTTTGGTGGATTTTTTTCTTCACCTTCTGAATTGAAAGGTGCGCCGCTAAATGGCTCATACTATTGTGTTCCCTCCTGTCATCAATGTGGTGAAAGGTGTGAACATGAAGTCCTTGCTGCATCGAAGGAAAGATTTTCTGCTTCAGCTCCTGACCCATATCATTCTAACTTACCTCCATGGTTACAGATTGCAGAATTTGGTAAAACCAAAGGATTGAACCTCAAGACCAAAGGTGATGGCCTTTTGCCGGATAGTACTGAATCGTCGCCACCTGATAAGAATTTGGACAAGATATGCCAGCATCTGCACCAGACATTACCTGATACAAATACTTGTAAAACTGTTGCGGGTTTTTGTTGTACTGACAACAAAAAGGCAGATGCTGACAGCCACAGCAGCAAAATTACAGACACACCACCCAGTGAATACATCAATTTCAACTCCGAGGTATCTGTCGGTGTGAAAATGAAGACATCACAATCAAGCAGTCCTTTTCCTTTGATTTTCAAGGCAAAGCAGGAAAAATATACCTCAAAACTTTCCGAGATGTCCCAGAAAGTGGAAGATCTCCAGTCAGGTGACCTAAGATCATGCAACATGTCCAATTCAAGTGTGTGTGATGGTAGTCAAATGTTTCCCACATCTGTTACTTCTGTAACCACAGACCTAGGCTTAGGAATGTGCTCTTCTCCTACCAGCAATAAATCTAAGAAACCTACTGCTCAACAAACTACTGAGCCTCCAGAGGAAATCCCAAGTCAATTTTCTTCAAACTTCAATTTGGCTGATGGGAATTTCTTGAAGCATCAATCCCAGTCTTCATCCTGCTTAAGTTTCGACTATTGTGAACAACTTGATGCAAAGAATACCAAAATTCTTTTTGAAGCTCTTTCCAAGGAGGTAAACTGGCAAGATGAAGCTTTACGTGTTATCGTCAAAACAATAGTTTCCAGCCCAACAAAAGCGGTTAAACAGCATGGAGCAAATCGGCGGGGGGACATTTGGATGAATTTTGTGGGACCTGATAGGCATGGTAAAAGGAAAGTTGCTGTTGCTTTAGCTGAGTTTTTGTATGGAAGCCGGGAAAGCTTCATTTTTGTTGATCTAAGTTCTGACGAAATGAAAGGATGCAATGTGAAATTCAGAGGGAAGACTACTGTTGATTTTGTTGTAGGCGAATATTGCAAGAAACCCTTGTCTGTAGTTTTCCTTGAAAATGTAGATAAGGCAGATATGGTAGTTCAAAGAAGTTTGTCTCAAGCAATCAAGACAGGAAAAATTGCAGACTCACATGGAAGAGTAATTAGTTTAAACAATGCAACATTTGTGACATCTTTCTTGGGTTACCATAATAGTTCGATTCCAACAACGGAACTTTCCAAGTATTCCGAGGAAAGAATGCAGAGGGTAAAAGGAGGAGCGATCAAGATAAAAGTGGAACATGTGATTGGAGACATAAGAAGTCAAAGCGACATTGCAGCTAACAGTTCAACAGATACCATCCCCAATATAATTTTCATACACAAAAGAAAGTTGATTGGTGAAAATGAATTTCATGATCAGCATTTAATCTCAGATGCAGCTAAAAGGGCACATACGACATCGAATTGGCTTCTAGATTTGAATCTTCCAGCTGAAGAGAATGAGCTGCAACAATTGGATGACGGAAACTCTGAACTTGCTTCAACTGGGAATCGAAACCGTTGGTTGCAAGATTTGTATGATCAGGTTGATGAGACAGTTGTTTTTAAACCTTACGATTTTGATACACTTGCAGATAGAGTGTTGAATGTGATCAGAAATAACTTCAACAAAATTCTTGGACCTGAGTGTGCCTTGCAGATCGAGTCAGAAGTCATGGACCAATTGCTTGCAGCTGCATATGTCTCAGTCAGGGATGCAGAGGTTGAGAACTGGGTGGATCATGTTCTCTGTGGAGGATTTTCAGAAGTACAGAGAAGGCACAACCTCACTACTTGTTCTATTGTGAAACTTGCTACATGTCCTGAGCAAGCTTCTAGTGTATACCTTCCCCCAATGATAATTTTAGAGTGA 3255 0.4344 MPTPVSSARQCLTEDASLALDEAVSVARRRGHSQTTSLHAVSALLSLPSSSLLRDACSRNSTYSLRLQFKALDLSLSVSLDRTPSTTTTTTVTEPPISNSLMAAIKRSQANQRRNPHNFHLYHNGNNSSHQNAPFSVSALKVELRHFVLSILDDPVVSRVFSEAGFRSSEIKLAIMRPLRYRAPPLFLCNLPPPERNFSPPSPLPCRSFFNFPFSGDPEAENFKSIGEVLARGKGKNPILLGACAKDALKSFVESTEIEKELPLELCGLKMLSVENDVVELCTGNCGIEVLKKKFEEIELIVDKNVGPGVVVNFGDLKGFILNDNNNNLIGYVVEELGKLLKVHSNKLWLMGAVASYEIYMKFVGMFPSVDKDWNLQLLPITSLQSYQRPRSSLLNSFVPFGGFFSSPSELKGAPLNGSYYCVPSCHQCGERCEHEVLAASKERFSASAPDPYHSNLPPWLQIAEFGKTKGLNLKTKGDGLLPDSTESSPPDKNLDKICQHLHQTLPDTNTCKTVAGFCCTDNKKADADSHSSKITDTPPSEYINFNSEVSVGVKMKTSQSSSPFPLIFKAKQEKYTSKLSEMSQKVEDLQSGDLRSCNMSNSSVCDGSQMFPTSVTSVTTDLGLGMCSSPTSNKSKKPTAQQTTEPPEEIPSQFSSNFNLADGNFLKHQSQSSSCLSFDYCEQLDAKNTKILFEALSKEVNWQDEALRVIVKTIVSSPTKAVKQHGANRRGDIWMNFVGPDRHGKRKVAVALAEFLYGSRESFIFVDLSSDEMKGCNVKFRGKTTVDFVVGEYCKKPLSVVFLENVDKADMVVQRSLSQAIKTGKIADSHGRVISLNNATFVTSFLGYHNSSIPTTELSKYSEERMQRVKGGAIKIKVEHVIGDIRSQSDIAANSSTDTIPNIIFIHKRKLIGENEFHDQHLISDAAKRAHTTSNWLLDLNLPAEENELQQLDDGNSELASTGNRNRWLQDLYDQVDETVVFKPYDFDTLADRVLNVIRNNFNKILGPECALQIESEVMDQLLAAAYVSVRDAEVENWVDHVLCGGFSEVQRRHNLTTCSIVKLATCPEQASSVYLPPMIILE 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1580 1084 MobiDBLite consensus disorder prediction 628 652 - -
Lal4g1580 1084 Pfam AAA domain (Cdc48 subfamily) 736 851 IPR003959 GO:0005524|GO:0016887
Lal4g1580 1084 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1082 - -
Lal4g1580 1084 PANTHER PROTEIN SMAX1-LIKE 8 1 1082 - -
Lal4g1580 1084 Gene3D - 10 178 IPR036628 -
Lal4g1580 1084 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Lal4g1580 1084 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Lal4g1580 1084 Gene3D - 670 886 IPR027417 -
Lal4g1580 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 844 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1580 Lal-Chr4 19995740 20000179 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1580 - - gmx:100800606 1377.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1344 13 12519324 12523956 Lal4g1580 4 19995740 20000179 ECH
Lal22g0357 22 2298471 2304339 Lal4g1580 4 19995740 20000179 ECH
Lal5g0948 5 11517168 11525005 Lal4g1580 4 19995740 20000179 ECH
Lal4g1580 4 19995740 20000179 Lal4g1580 4 19995740 20000179 ECH