Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0357 ATGCCGACGCCACTAAGCGCAGCTCGCCAATGCTTAACCGACGAGGCGGCGCGTGCACTCGACGATGCGTCACTTGTGGCTCGCCGCCGCTGCCACGCGCAAACAACCTCCCTCCATGCTGTCTCCGCCTTATTATCGCTCCCTTCCTCCGCCCTCCGCGACGCCTGCATCCGTGCCCGGACCACCGCCGCCGTGTCCTCTCCCTACTCGCCACGGCAGCTCCACCTCAGAGCACTGGAACTCTCCGTCAGCGTCTCCCTCGATCGCCTTCCTTCGTCCAAGTCTGCCGCCGCAACCGCCGATGACGACGGACCTCCGGTGTCAAACTCGCTCATGGCAGCAATCAAACGCTCCCAAGCCAACCAGCGCCGCCACCCGGACAGCTTCTACTTCATTCACCAAAACGGGAACGGAACGACGTCGTTTTTGAAGGTGGAGTTGAAGCACTTTGTTTTATCGGTTCTCGATGACCCGATTGTGAGTCGGGTCTTATGCGAAGCGGGTTTTCGGAGCTGCGATGTTAAGCTCGCGTTACTTCAACCACCACCACCACCACCTCCTCCTCGAACTCGGTTCCCACCGGTTTTTCTTTGTAACCTTGAACCGGGTCGAACCGGTTTAAACCCTCCCTTCATCGATGACAATTCCAGAAGGATCGTGGAGATTCTCGTTAAAAAAAGGAATCTTTTCTTGATGGGTATTTACGCAAAGGGTGCTTTGAAGAGTTTCATAGAACTAATTCAAAAGGGTTATGGGGGTGCTTTGTTTCCTTCAGAAATGGCTTCCTTGAAGGTTCTCTGCATTGAAAAGGAAATTGCTGAGTTTGTTGGTGAAACTGGGAACAACAGTGAGGACAGGATTCGGTTGAGGTTAGAGGAGTTGGGTTGTGAGGTTGAGCAATGCAAGGGTAGTAGTGTTGTATTGAGCTTCGGGGAAGTTGAGGTTTTTGTTGGGGACTGTGTAAAGAATGTTGATAATGTCAAGCTTGTTGTTTCGGGTTTGACGAGGTTGTTGGAGATTCATCATGGGAAGATTTGGTTGGTGGGAGTGGCTGAAACCTCTGATGCCTATTCTAAGTTTTTGGGTTTGTTCCCTAATGTGGAAAAGGATTGGGATCTGCATTTGTTGACTATTACTTATCCAACCCCTTCAATGGAAGGACTATACCCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGCTGGCTTCTTTTCTACACCTTCTGAAATCAAAAGTCCCGCAATCTGTACAAATGTACCTTTCGCTCGTTGTGACAAATGCAATGAAAAATGTGAAGAAGAAGTTGCGGATATTATGAAGGCATGTCCTGCTACCCTGGCATCTGGTTACTCAACAAGCTTGCCTTGGTTACAGAAGGTTAATGCGGACATGCAAAGAGGACCCGATGCGGCAAAGGCTAACGAAGAAAACACAAGTTTGAATGGTAAGATCTTGGAATTGCAAAAGAAATGGAATGATATTTGTCAACGTCTACACCAGACCAGAGCTCTGCCTGAATTTGAGGGTTTACGATTTGGATCAAGTTTCAAGGAAAGCAGCAGTAATGTTCCATCACATAAAGAAATCCAATATTCTAGTGGAATTGCATACATGCCTAAACAGTTGCATGATATTTTTCCATCGAAACAATTATCATCTGTTTCAGTACCTTTTAACACAGTCAGTGTCAATACTGGAACTGATCATGGACCAAAAGTTTCAGTGATTCAGCAAACTGACATGCAGATCCCTTTGATTGTCCCTTCCCCTATGGCCAACGTAAGTGTGCTAGATCACAGATTATCTTCATCCCTTACACCTGTGATCACAGATTTAGGATTGGGAACATTATTATATACATCTGCAGCTCAGGAGCCGGATACCCCAAAACTACGAGATCATAAAAAACATCTTCAACACTTGTCAGACTCCCTTTCAACCGGTTGTGATGCTCTGAATGAAAATGCTTCACACCAAATTGTTAGATCTTCTCCCTGCTCTAGTCCATATTTGGAAGGAAATTTTCATTCAGTAGATTTCAAGTCTCTGAATCAACTGCTCAATGAAAAGGTTGGCTGGCAGGATGAGGCCATATGTGCTATCAATCGAACTTTGTTCCTTTGTAAATCTGGTGCAGGAAAGCGTAGAGGCTCTCGTGTTATAGCAGACATATGGTTTGCTTTCCTTGGTCCAGATAGAGTTGGAAAAAGGAAAATTGCTTCATCTCTCGCCGAGGTTATATTTGGAAACACAGAAAGCCTAATTTCTGTGGATTTGAGCTCCCAGGGCAGGCTTTACCCATTAAACTCAATTTTTGAAAGCCAAAAGTCATATTGTCATGATATGCTTGGGAGGAAGACAGTTGCGGACTATATTGCTGGGGAGTTGAGTAAAAAACCTCATTCGGTTGTGTTTCTTGAAAATGTAGATAAAGGTGATTTTCTGGTGCAGACTAGTTTGTTACAGGCAATGAGAACAGGTAAATTTCGAGACTCACGCGGAAGGGAAATCAGCATCAATAATGCAATCTTCATTGTAGCCTCAACTGTTTGTAAAGGTAATGATTCTTTTGCTTTTGAAGAATCTAATATGTTTTCTGAGGAAAGAATCCTTGAAGCCAAAAGATGTCAAATGCAATTATTACTTGGAGATACATCTGAGGGTGCCAAAATAAGCAGTAGCACAAACGTCAAGGTTGTACCAAGAAAAGGATACTCCAAATCACCATTTTTGAATAAGAGAAAGCAGAATGATGGTAGTGAATGCAGAGAAGGAGCTTCATGCAAGACACAGAAACAGGCCAGTGAGACATCAAGATCCTATCTGGATCTAAATATGCCTGTAGAGGACACTGAAGAGGTCATTGATGACCATGACCATGGAAGTGAGTCTGTAGTGAAAGAGACAGGAGCCTGGTTAAGTGATTTCTGCAATCAAATTGACGAAAAAGTGATTTTTAAGCCATTCAATTTCAATTTGCTTGCTGAGAAAGTATTGAAAAGAATTAGCATACAATTCGAAACGACATTTGGTTCAGAGTCTCAGCTTGAAATTGATTACGAGGTAATGACACAGATACTTGCATCTGCTTGGTTATCAGACAAGAAAAATGCAATGGATGATTGGGTTGAAAGTGTTCTTCTTAGAGGCTTCATTGAAGCACAGAAAAAGTACCACCCTGCAGCTCAGTGTGTCATGAAACTGGTTAACAGTGAAACCATTTTTGTGGAAGAGCAAGCTCATGGAGTATGCCTTCCAGCTAGAATTAACCTGCACTAA 3282 0.4421 MPTPLSAARQCLTDEAARALDDASLVARRRCHAQTTSLHAVSALLSLPSSALRDACIRARTTAAVSSPYSPRQLHLRALELSVSVSLDRLPSSKSAAATADDDGPPVSNSLMAAIKRSQANQRRHPDSFYFIHQNGNGTTSFLKVELKHFVLSVLDDPIVSRVLCEAGFRSCDVKLALLQPPPPPPPPRTRFPPVFLCNLEPGRTGLNPPFIDDNSRRIVEILVKKRNLFLMGIYAKGALKSFIELIQKGYGGALFPSEMASLKVLCIEKEIAEFVGETGNNSEDRIRLRLEELGCEVEQCKGSSVVLSFGEVEVFVGDCVKNVDNVKLVVSGLTRLLEIHHGKIWLVGVAETSDAYSKFLGLFPNVEKDWDLHLLTITYPTPSMEGLYPKSSLMGSFVPFAGFFSTPSEIKSPAICTNVPFARCDKCNEKCEEEVADIMKACPATLASGYSTSLPWLQKVNADMQRGPDAAKANEENTSLNGKILELQKKWNDICQRLHQTRALPEFEGLRFGSSFKESSSNVPSHKEIQYSSGIAYMPKQLHDIFPSKQLSSVSVPFNTVSVNTGTDHGPKVSVIQQTDMQIPLIVPSPMANVSVLDHRLSSSLTPVITDLGLGTLLYTSAAQEPDTPKLRDHKKHLQHLSDSLSTGCDALNENASHQIVRSSPCSSPYLEGNFHSVDFKSLNQLLNEKVGWQDEAICAINRTLFLCKSGAGKRRGSRVIADIWFAFLGPDRVGKRKIASSLAEVIFGNTESLISVDLSSQGRLYPLNSIFESQKSYCHDMLGRKTVADYIAGELSKKPHSVVFLENVDKGDFLVQTSLLQAMRTGKFRDSRGREISINNAIFIVASTVCKGNDSFAFEESNMFSEERILEAKRCQMQLLLGDTSEGAKISSSTNVKVVPRKGYSKSPFLNKRKQNDGSECREGASCKTQKQASETSRSYLDLNMPVEDTEEVIDDHDHGSESVVKETGAWLSDFCNQIDEKVIFKPFNFNLLAEKVLKRISIQFETTFGSESQLEIDYEVMTQILASAWLSDKKNAMDDWVESVLLRGFIEAQKKYHPAAQCVMKLVNSETIFVEEQAHGVCLPARINLH 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0357 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 851 IPR027417 -
Lal22g0357 1093 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1092 - -
Lal22g0357 1093 Gene3D - 674 914 IPR027417 -
Lal22g0357 1093 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Lal22g0357 1093 Pfam AAA domain (Cdc48 subfamily) 727 858 IPR003959 GO:0005524|GO:0016887
Lal22g0357 1093 Gene3D - 10 180 IPR036628 -
Lal22g0357 1093 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1092 - -
Lal22g0357 1093 Coils Coil 471 491 - -
Lal22g0357 1093 MobiDBLite consensus disorder prediction 915 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0357 Lal-Chr22 2298471 2304339 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0357 - - gmx:100804458 1387.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0357 22 2298471 2304339 Lal22g0357 22 2298471 2304339 ECH
Lal22g0357 22 2298471 2304339 Lal4g1580 4 19995740 20000179 ECH
Lal13g1344 13 12519324 12523956 Lal22g0357 22 2298471 2304339 ECH
Lal5g0948 5 11517168 11525005 Lal22g0357 22 2298471 2304339 PCT
Lal22g0357 22 2298471 2304339 Lal5g0948 5 11517168 11525005 PCT