Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1293 ATGAAGTCCTGGTGCAATTGTTACATTCCCAGCCAAATTCATGTTGTGATAAAATCCATTTTGATATCATCTTCAATTTGTGGCATTTCTATCTTTATAACAATGTCACTGATGTCCACAACAAAGGTACAAGTTACAAAATCATCAGTACAAGTACAAGTACAAGTACAAGATGTGAGTGCACCAACAAGTGTTGAACATCTAGTGTTTGGAGTTGGTTCAGGTAGAAGTTTATGGCCTAAGAGGAAGAAACATGTTAAGCTGTATTGGAAACCAAATGAAATGAGAGGATGTGTATTCCTTGGTACTCTTCCACATCAACAAAACAATGATACATCACTTCCTCCTCTATGTCTCTCTTCAAACACTTCTCAATTTCGTTACACTTGGGGACGCACTGGTCAATTATCAGCAAATCGTATGACACGAATGGTCAAAGACATAGTAAACATGAATTATTCTAATGTTAGATGGTATGTGTTTGGTGATGATGACACTGTATTCTTCCCTCACAATCTGGTTAAAACATTGTCAAAATATGATCATAGACTTAGCTACTATCTTGGTGCACCCTCTGAGAGTTATTTGGCAGCACATGCTTTTAGCTTTAACATGGCTTTTGGTGGAGGTGGCATTGTTATCAGTTCTTCACTAGCACAAGTTTTAGCCAAGGTTGTTGATTCATGCTTAAAAAGGTACCATTATCTCTATGGAAGCGATGCTAGGACTTACTCTTGTATAACTGAGCTTGGTGTGGGATTAACGCAAGAATCCGGTTTTCATCAGGTTGATATGCTAGGTAATATTTTTGGGCTATTGGCTACACATCCATTAAGTCCCTTGTTGTCGCTACATCACGTGGATCAGACATATCCCATATTCCCAAACATGACAAGAATAAAAGCTTTGCGACACTTATTTAAAGCTGCAAATGTTGATTCTGAAAGGATCCTTCAACAAACAGTTTGCTATCAGAACAAGTTTTCATGGACCATTTCAGTATCATGGGGTTATGCTATTCTACTTTTCCCATTCCATATGCCTTTGCCAGATATTATCCGTACGCCACATACATTCAAGCCCTGGAGAAAAGGAAATGTTTTGGAAAATGCATATAATTTCAACACAAGACAACTTCAAAATGACCCATGTAAAAAGCCAATCATTTTCTATCTGGACACTGTTTCTTCTGATAAAGATGGCACCATCATAACCAGTTATAGGAAATCCTTTCAAAACTGCTCATCCCAAATTGCACCACTAAAGAATCTGGAAGTCATCAAAGTATTCTCAAAGAAACTAGACCTTGACATCAATCAGTTACGGAGTCCAAAAAGGCAGTGTTGTGATATATTGCCCTCCAGAACTCAGGACCTAATGGAAGTTGCAATTAGAGAATGCAAAGATGGAGAACTGATTTTCATGCCTTCACATATATAA 1440 0.3778 MKSWCNCYIPSQIHVVIKSILISSSICGISIFITMSLMSTTKVQVTKSSVQVQVQVQDVSAPTSVEHLVFGVGSGRSLWPKRKKHVKLYWKPNEMRGCVFLGTLPHQQNNDTSLPPLCLSSNTSQFRYTWGRTGQLSANRMTRMVKDIVNMNYSNVRWYVFGDDDTVFFPHNLVKTLSKYDHRLSYYLGAPSESYLAAHAFSFNMAFGGGGIVISSSLAQVLAKVVDSCLKRYHYLYGSDARTYSCITELGVGLTQESGFHQVDMLGNIFGLLATHPLSPLLSLHHVDQTYPIFPNMTRIKALRHLFKAANVDSERILQQTVCYQNKFSWTISVSWGYAILLFPFHMPLPDIIRTPHTFKPWRKGNVLENAYNFNTRQLQNDPCKKPIIFYLDTVSSDKDGTIITSYRKSFQNCSSQIAPLKNLEVIKVFSKKLDLDINQLRSPKRQCCDILPSRTQDLMEVAIRECKDGELIFMPSHI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1293 479 Gene3D - 55 328 - -
Lal10g1293 479 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 14 474 - -
Lal10g1293 479 PANTHER FRINGE-RELATED 14 474 - -
Lal10g1293 479 Pfam Protein of unknown function, DUF604 200 449 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1293 Lal-Chr10 18988542 18990156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1293 29 441 Glycosyltransferase AT1G05280 46.934 6.07e-138 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1293 - - gmx:100779943 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0036 25 255670 257323 Lal10g1293 10 18988542 18990156 LSH
Lal10g1293 10 18988542 18990156 Lal8g0050 8 424835 427065 LSH
Lal2g0427 2 2552191 2557395 Lal10g1293 10 18988542 18990156 PCT
Lal9g0394 9 2616792 2619932 Lal10g1293 10 18988542 18990156 PCT