Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal10g0024 | ATGATGGATACAAGTAACCTGAATGATATAGACACCAATGTTGTTCCAAGTACACAAATTGTAACTTCAAATGCCAGTTTTGAAACTCAGAACTCATCCGTGCCGTTAATTGAAGTATCCCATGTGAACCTTTCTAAGGAAGAGGAAGTGAAAATCACAAATCAAACAGCACAATTCAAAGCATGTAAGGGTCCTATTAAGAATAAGAGTGCAAAGACCCCAACTTCCAGTGTTGTTCATTCAAGTTTGGTGAAAAGGAACAAAAATGCAAAAGATAAAGAGATGTCATCGGCTGTTTCAAATGGTGCATCGGCTTTAGATTCTCACACAAGACAGCCTATTAAAAACAAATCATTCAATGGTCGCCAGACTCAATTGGTCAAGCACCCTTCAAGGTCCGATGCAGCGTCTTCTGAAGTAGCTACGGAGAAGACGGAACCAAAATCAGTGAAAAAGGGACCTGTTGATAAAGTTCAAGTAGAATCAGAATCTTCTTTAACTAACAACGCAGAAGATACCAAACCTCGCAAGGTGGGGACAATTCCAAATTATGGATTCAGTTTCAGGTGTGGTGAAAGAGCTGAAAGAAGAAGAGAGTTCTACAGTAAAGTTGAGGAAAAGATTCATGCAAAGGAGATGGAAAAGAGTAACTTGCAAGCAAAATCCAAGGAGTCACAAGAAGCCGAGATGAAGATGCTTAGGAAGAGTCTAACATTTAAAGCAACTCCTTTGCCAACTTTCTACCAGGAGCCTCCTCCTAAGGTGGAGCTTAAGAAGATACCAACTACAAGACCTAAATCTCCCAAGCTTGGTCGCAAGAAGAGTTCAATCAACTCTGAGTCGGATGGAAACACTAGCAGCAGCTCTCGACAAGGTCGTTTAACTTTCAACGAGAAAATCTCTCAGGGCAATAATCCTACTAAAGGAGTTACTCCTGTCCATCCAACGAAGCCACTAAGAAGATCCCTTCCTGCTCAACTTGCTACTAGGAAGCTCAATTCATCAAATTCAAAAACTGCACCTGCTTCATCTGAAGCAAGGAAGGTTGAAATTACCGTATCTAGTGCTGCGACAAAAAAAGATGTCAAGTCATCCAATGCTACAAAGGAACAGAAAATTGCAATACCTGCAACCAATGAAGAGGATAGTACCTTGCCTAGTGAGACAACTGAGGCTCTGCCCCTGAATGTGGTTGATTCAGACAAGCCGAGTGAAGCGCAGTCTCATTTAAACGGTGATCTAGTGGTTGAAGAGAATCCTCAGCTTGCCTTTGCTCAAGAATCTATAACAGCAGAACATTAA | 1302 | 0.414 | MMDTSNLNDIDTNVVPSTQIVTSNASFETQNSSVPLIEVSHVNLSKEEEVKITNQTAQFKACKGPIKNKSAKTPTSSVVHSSLVKRNKNAKDKEMSSAVSNGASALDSHTRQPIKNKSFNGRQTQLVKHPSRSDAASSEVATEKTEPKSVKKGPVDKVQVESESSLTNNAEDTKPRKVGTIPNYGFSFRCGERAERRREFYSKVEEKIHAKEMEKSNLQAKSKESQEAEMKMLRKSLTFKATPLPTFYQEPPPKVELKKIPTTRPKSPKLGRKKSSINSESDGNTSSSSRQGRLTFNEKISQGNNPTKGVTPVHPTKPLRRSLPAQLATRKLNSSNSKTAPASSEARKVEITVSSAATKKDVKSSNATKEQKIAIPATNEEDSTLPSETTEALPLNVVDSDKPSEAQSHLNGDLVVEENPQLAFAQESITAEH | 433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 66 | 178 | - | - | |
| Lal10g0024 | 433 | PANTHER | PROTEIN WVD2-LIKE 5-RELATED | 19 | 423 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 139 | 158 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 94 | 138 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 272 | 311 | - | - | |
| Lal10g0024 | 433 | Pfam | Targeting protein for Xklp2 (TPX2) domain | 186 | 255 | IPR027329 | - | |
| Lal10g0024 | 433 | Coils | Coil | 201 | 221 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 160 | 174 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 243 | 389 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 69 | 84 | - | - | |
| Lal10g0024 | 433 | MobiDBLite | consensus disorder prediction | 327 | 389 | - | - | |
| Lal10g0024 | 433 | PANTHER | PROTEIN WVD2-LIKE 4 | 19 | 423 | IPR044833 | GO:0008017 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal10g0024 | Lal-Chr10 | 246230 | 254129 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal10g0024 | - | - | gmx:100786958 | 483.411 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal10g0024 | 10 | 246230 | 254129 | Lal10g0024 | 10 | 246230 | 254129 | ECH | |
| Lal25g1056 | 25 | 13900450 | 13904617 | Lal10g0024 | 10 | 246230 | 254129 | LSH | |
| Lal10g0024 | 10 | 246230 | 254129 | Lal17g0230 | 17 | 1430757 | 1435338 | PCT | |
| Lal10g0024 | 10 | 246230 | 254129 | Lal21g0335 | 21 | 2237214 | 2241433 | PCT | |
| Lal10g0024 | 10 | 246230 | 254129 | Lal4g0217 | 4 | 1366414 | 1370885 | PCT | |
| Lal17g0230 | 17 | 1430757 | 1435338 | Lal10g0024 | 10 | 246230 | 254129 | PCT | |
| Lal21g0335 | 21 | 2237214 | 2241433 | Lal10g0024 | 10 | 246230 | 254129 | PCT | |
| Lal4g0217 | 4 | 1366414 | 1370885 | Lal10g0024 | 10 | 246230 | 254129 | PCT |