Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0492 ATGTCATCTGCTGGTGTCACCACTCTTAGCCCTGTTCCCAGGGAGCTATTGTTGTCCCCAGATGGATACTATACCCCATTGCACTTGTCATTGGATCGAGAGTTTATTTTCATATATCTGTCCTATTTTGGATCTTTGACTCCAATGCGAGTTCTTCCCTGCGATACCATTGAGTCCGTGAAACTCAAAATCCAGAAGTCTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTCTGTGATGGGCGGGAACTAGCACGGAGCAATTCCCTGCTGAAAGAATATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACTTCTTCCGGGAAGGACTTTACTTTTCAGGTGGAGAGATGCAGAGATGTCGGGTACATTAAGCAACAGATTGGGAAAAAGGAGAAGTGCTTTGCTGATCCTGAACAGCAGGAAGTTATGTGTAATGGCAAGCTGCTTGAGGATCAGATGCTTATTGATGATATCTGCAGTAAATATAACGATGCAGTGATTCATCTTTTTGTTAGAGTGAAATATGCAGAAGTTAGGACGGGACAAGATGAGTTGTCCGTCGTGGCAAAGGAGTTGAATGATACAAAAGATTATGAAACTAATTGTAGGAGAAAATATGATATTAGTAAAGAAGATACAAGAAGGGAGTATGGAGTCGTTGAGCCAATTATGCCAAGGAAGGCTCTTGATAGGGATCTTCTTTTGGAGCCGGTTATTGTTAACAAAAAAATTGAATTAGCTTCTGAGATTTGGAATATGATAAACTCTACATATGAAGGGCTAGACATTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGTGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTATATATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGGGGTTTACCTTTCTCAGAAGACGGTGAAGGCTTAAAGAAGGGAACAACAGTTGGTCAGGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGATCACCCAATGAGTGGTCGCCGATCATTATTTGGTGATGAGAAGGGTTTTGCCGGGGTTCCCCCGACAGTTATGGTTAAGTGCTTGCATAAAGGATTTAACCATCCCGGGGAGTTGACTACTAAGATTGGCTCCTTGCAAATGTTCATAGAGAATAATGGAAGCTGCGAGGATATGGGCCCTGGGGCTTTCCCAGTGAAGGAAGTGCATAAAATTTCAGTAGTGGACATGCGACTCGCAAACGCAGATAGACATGCTGGGAATATTTTGATCGGCAAAGTGGAGGAAAATGGCCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCAAAAGTTTTGAGGATTGTACCTTCGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGATCATTGACTATATAAAGTCACTGGATGCTGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGCGCGCGCACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGAAGAGAGGGATGACCCCCTTTGCCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTTGCACAAGTGAAGCCACATTTCTGGATACTGTTTCCGAAATCATGGACCAGCACCTTGATGAGATCACGGGTTCCATTTCTTAA 1785 0.4359 MSSAGVTTLSPVPRELLLSPDGYYTPLHLSLDREFIFIYLSYFGSLTPMRVLPCDTIESVKLKIQKSEGLPSLTNKQKLVCDGRELARSNSLLKEYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYIKQQIGKKEKCFADPEQQEVMCNGKLLEDQMLIDDICSKYNDAVIHLFVRVKYAEVRTGQDELSVVAKELNDTKDYETNCRRKYDISKEDTRREYGVVEPIMPRKALDRDLLLEPVIVNKKIELASEIWNMINSTYEGLDIGNYPIRSAEGTGGAYFMLDSTGQKYISVFKPIDEEPMAVNNPRGLPFSEDGEGLKKGTTVGQGAFREVAAYILDHPMSGRRSLFGDEKGFAGVPPTVMVKCLHKGFNHPGELTTKIGSLQMFIENNGSCEDMGPGAFPVKEVHKISVVDMRLANADRHAGNILIGKVEENGQAVLIPIDHGYCLPKSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDADEDIALLKFHGWDLPVECARTLQISTMLLKKGVKRGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPCTSEATFLDTVSEIMDQHLDEITGSIS* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0492 594 Gene3D - 40 111 - -
Gso7g0492 594 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Gso7g0492 594 CDD Ubl_ubiquitin_like 116 186 - -
Gso7g0492 594 Pfam Phosphatidylinositol 3- and 4-kinase 289 538 IPR000403 -
Gso7g0492 594 SMART ubq_7 36 109 IPR000626 GO:0005515
Gso7g0492 594 SMART ubq_7 114 188 IPR000626 GO:0005515
Gso7g0492 594 SUPERFAMILY Protein kinase-like (PK-like) 424 590 IPR011009 -
Gso7g0492 594 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 280 573 IPR000403 -
Gso7g0492 594 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Gso7g0492 594 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Gso7g0492 594 Pfam Ubiquitin family 47 110 IPR000626 GO:0005515
Gso7g0492 594 Gene3D - 114 190 - -
Gso7g0492 594 SUPERFAMILY Ubiquitin-like 29 110 IPR029071 -
Gso7g0492 594 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 593 IPR044571 -
Gso7g0492 594 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Gso7g0492 594 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0492 Gso-Chr7 4945411 4948696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0492 1 588 Acyl Lipid Metabolism Gene Families AT5G24240 54.774 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0492 - - gmx:100792568 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0492 7 4945411 4948696 Gso7g0492 7 4945411 4948696 ECH
Gso1g1927 1 55965710 55968848 Gso7g0492 7 4945411 4948696 ECH
Gso7g0492 7 4945411 4948696 Gso16g0199 16 2318465 2322126 GST
Gso19g2152 19 50015946 50018873 Gso7g0492 7 4945411 4948696 PCT
Gso3g2195 3 47128809 47131691 Gso7g0492 7 4945411 4948696 PCT
Gso7g0492 7 4945411 4948696 Gso19g2152 19 50015946 50018873 PCT
Gso7g0492 7 4945411 4948696 Gso3g2195 3 47128809 47131691 PCT