Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0199 ATGTCGTCTGCTGGTGTCACCACTCTTAGCCCTGTTCCAAGGGAACTATTGTTGTCCCCAGATGGATACTATACCCCATTGCACTTGTCATTGGATCAAGAGTTTATTTTCATATATCTGTCCTATTATGGATCTTTGACTCCAATGCGGGTTCTTCCCTGCGATACCATCGAGTCTGTGAAACTCAAAATCCAGAAGTCTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGCGATGGGCGGGAGCTAGCGCGGAGCAATTCCCTGCTGAAAGAATATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTTATTAGGCTGTCGGATCTCCAGACCATCAGTGTGAGAACTTCTTCCGGGAAGGACTTCACTTTTCAGGTGGAGAGATGCAGAGATGTCGGGTATGTTAAGCAACAGATTGCGAAGAAGGAGAAGCGCTTTGCTGATCCTGAACAGCAGGAAGTTGTGTGTAACGGGGAGCTGCTTGAGGATCAGACGCTTATTGATGGTATCTGCAGTAAATATAACGATGCAGTGATTCATCTTTTTGTTAGGGTGAAATATGCAGAAGTTAGGACGGGACAAGATGAGTTGTCCGTTGTGGCAAAGGAGTTGAAAGATACAAAAGATTATGATGTTAGTGAAACTAATTGTAGGAAAAAATATGATGTTAGTAAAGAAGATACAGGAAGGGAGTATGGAGTCGTTGAGCCAATTGTGCCGAGGAAGGCTATTGATAGGGATCTTCTTTTGGAGCCGGTTATTGTTAACAAAAAAATTGAATTAGCTTCTGAGGTTTGGAATATGATAAACTCTACATATGAAGGGCTAGACAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGTGCTTACTTTATGCTTGATTCAACCGGGCAAAAGTACATATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCTGAAGATGGTGAAGGCTTAAAGAAGGGTACAACAGTTGGTCAGGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGATCATCCAATGAGTGGCCGCCGATCATTATTTGGTGATGAGAAGGGATTTGCTGGGGTTCCCCCGACTGTTATGGTTAAGTGCTTGCATAAAGGATTTAACCATCCTGGAGACTTGACTGCTAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGCTGCGAGGATATCGGACCTGGGGCTTTCCCAGTGAAGGAAGTGCATAAAATTTCAGTACTGGACATGCGACTCGCAAACGCAGATAGACATGCTGGGAATATTTTGATTGGCAAAGAGAAGGAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAGGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGATCATTGACTATATAAAGTCACTGGATGCTGATGAAGATATTGCCCTTTTGAAGTTTCATGGATGGAATCTTCCAGTTGAATGCGCCCGCACTCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGGGGGATGACCCCCTTTGCCATTGGAAGTCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCCACGTTTCTGGATGCTGTTTCTGAAATCATGGACCAGCACCTTGATTAG 1773 0.4394 MSSAGVTTLSPVPRELLLSPDGYYTPLHLSLDQEFIFIYLSYYGSLTPMRVLPCDTIESVKLKIQKSEGLPSLTNKQKLVCDGRELARSNSLLKEYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKRFADPEQQEVVCNGELLEDQTLIDGICSKYNDAVIHLFVRVKYAEVRTGQDELSVVAKELKDTKDYDVSETNCRKKYDVSKEDTGREYGVVEPIVPRKAIDRDLLLEPVIVNKKIELASEVWNMINSTYEGLDSGNYPIRSAEGTGGAYFMLDSTGQKYISVFKPIDEEPMAVNNPRGLPFSEDGEGLKKGTTVGQGAFREVAAYILDHPMSGRRSLFGDEKGFAGVPPTVMVKCLHKGFNHPGDLTAKIGSLQMFMENNGSCEDIGPGAFPVKEVHKISVLDMRLANADRHAGNILIGKEKENDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDADEDIALLKFHGWNLPVECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEATFLDAVSEIMDQHLD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0199 590 CDD Ubl_ubiquitin_like 116 186 - -
Gso16g0199 590 SMART ubq_7 114 188 IPR000626 GO:0005515
Gso16g0199 590 SMART ubq_7 36 109 IPR000626 GO:0005515
Gso16g0199 590 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Gso16g0199 590 Gene3D - 37 111 - -
Gso16g0199 590 Pfam Ubiquitin family 45 110 IPR000626 GO:0005515
Gso16g0199 590 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Gso16g0199 590 Gene3D - 112 196 - -
Gso16g0199 590 SUPERFAMILY Ubiquitin-like 29 110 IPR029071 -
Gso16g0199 590 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 590 IPR044571 -
Gso16g0199 590 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Gso16g0199 590 ProSiteProfiles Ubiquitin domain profile. 55 109 IPR000626 GO:0005515
Gso16g0199 590 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 590 - -
Gso16g0199 590 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Gso16g0199 590 ProSiteProfiles Ubiquitin domain profile. 114 172 IPR000626 GO:0005515
Gso16g0199 590 SUPERFAMILY Protein kinase-like (PK-like) 428 589 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0199 Gso-Chr16 2318465 2322126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0199 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.790 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0199 - - gmx:100815111 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0492 7 4945411 4948696 Gso16g0199 16 2318465 2322126 GST
Gso19g2152 19 50015946 50018873 Gso16g0199 16 2318465 2322126 PCT
Gso3g2195 3 47128809 47131691 Gso16g0199 16 2318465 2322126 PCT
Gso16g0199 16 2318465 2322126 Gso19g2152 19 50015946 50018873 PCT
Gso16g0199 16 2318465 2322126 Gso3g2195 3 47128809 47131691 PCT