Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2152 ATGTCATCTGCCGGTGTCTCTACTCTTAGTGTGGTTCCCACTGAGCCATTGCTCTCACCAATGGCATTCCCTTTTCCAATTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCTGGCTCATTGACTCCCATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCAAAGGTCTGAAAGCCTTCCGTTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTTGCGCGAAGTGATTCGCTGCTCAAGGACTATGGAGTAACCGATGGAAATGTTTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAGTGTGAAAACTTCTTGTGGGAAGGAATTCACGTTTCAGGTCGAACGAGGCAGGGATGTCGGGTACATAAAGCGGCGGATTGCCAGAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGAAATATGCTGCAAACATAATGATGCAGTGGTACATCTGTTTGTGAGAAAAAAACATGTTAAAGTTCAGAGGAGGCCCCTTGAGTTGTCCATTGTAGCAAAAGATTTGATTAATAAGAAAAAAAATGATGTCAATGGAAATACTAACAGGAGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCCGAGGAAGCCTCCCGATAGAGATTTTATTTTGGAGCCAGTTATTATTAACCCTAAAATTGAATTAGCTCCAGCTATTTGGAATATGGTGAACTCTACATATGATGGACTTGGCAGTGGCAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGGGCTTACTTTATGATTGATTCAGCGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTCTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGCGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCCTATGTTCTAGACCATCCATTGAGTGGGCGCCGCTCGTTATTTGGTGATGGGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAATCATTCAACTATCCCAGAGAATTTACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCGGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCTAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCCTGCCCACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCTCAAGCTCGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTGCCCTTTTAAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTTTGCCATTGGAAACCTGATGTGCAGAGAATCCTTGAACAAGGAATCTGTGATTGAAGAAATAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGACTTGCGCCTCGATGAGATTGTCAGAGCTCGTTTATAA 1800 0.4328 MSSAGVSTLSVVPTEPLLSPMAFPFPIPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRSESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVISVKTSCGKEFTFQVERGRDVGYIKRRIARREKQFDDPEEQELVCNGERLEDQRLIDEICCKHNDAVVHLFVRKKHVKVQRRPLELSIVAKDLINKKKNDVNGNTNRRSYDVGKEDTIRKSDVIQRAVPRKPPDRDFILEPVIINPKIELAPAIWNMVNSTYDGLGSGKYPIRSAEGTGGAYFMIDSAGQKYVSVFKPIDEEPMALNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRSLFGDGKGFAGVPPTLMVKCLHKSFNYPREFTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVQAALDSVLPGTSEATLLDAVSQIMDLRLDEIVRARL* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2152 599 Gene3D - 37 111 - -
Gso19g2152 599 ProSiteProfiles Ubiquitin domain profile. 118 175 IPR000626 GO:0005515
Gso19g2152 599 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Gso19g2152 599 SUPERFAMILY Ubiquitin-like 109 192 IPR029071 -
Gso19g2152 599 SUPERFAMILY Protein kinase-like (PK-like) 431 594 IPR011009 -
Gso19g2152 599 SUPERFAMILY Ubiquitin-like 37 112 IPR029071 -
Gso19g2152 599 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
Gso19g2152 599 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 285 578 IPR000403 -
Gso19g2152 599 SMART ubq_7 116 190 IPR000626 GO:0005515
Gso19g2152 599 SMART ubq_7 38 111 IPR000626 GO:0005515
Gso19g2152 599 CDD Ubl_ubiquitin_like 118 188 - -
Gso19g2152 599 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Gso19g2152 599 Pfam Ubiquitin family 118 191 IPR000626 GO:0005515
Gso19g2152 599 Pfam Ubiquitin family 40 112 IPR000626 GO:0005515
Gso19g2152 599 Pfam Phosphatidylinositol 3- and 4-kinase 294 543 IPR000403 -
Gso19g2152 599 Gene3D - 116 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2152 Gso-Chr19 50015946 50018873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2152 35 593 Acyl Lipid Metabolism Gene Families AT5G24240 55.830 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2152 - - gmx:100791631 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2152 19 50015946 50018873 Gso3g2195 3 47128809 47131691 GST
Gso19g2152 19 50015946 50018873 Gso7g0492 7 4945411 4948696 PCT
Gso19g2152 19 50015946 50018873 Gso16g0199 16 2318465 2322126 PCT
Gso7g0492 7 4945411 4948696 Gso19g2152 19 50015946 50018873 PCT
Gso16g0199 16 2318465 2322126 Gso19g2152 19 50015946 50018873 PCT