Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2195 ATGTCATCAGCTGGTGTCTCTACACTTACTGTGGTTCCCACTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTTCCAATTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTCATTGACTCCCATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCAAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTTGCGCGAAGTGATACGCCGCTCAAGGACTATGGAGTAACGGATGGAAATGTTTTGCATTTGGTAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTGTGGGAAGGAGTTCACGTTTCAGGTCGAACGAGGCAGGGATGTCGGGTACATAAAGCAGCGGATCGCCAGAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGTTGCAAACATAATGATGCAGCAGTCCATCTGTTTGTGAGAAAAAAGCATGTTAAAGTTCAGAGGAGACCCCTTGAGTTGTCCATTGTAGCAAAAGATTTGATTGATAAGAAAAAAAATGATGTCAATGGAAATACTAATCGGAGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCCGAGAAAGCCTCCTGGTAGAGATTTTATTTTGGAGCCAGTTATTATTAACCATAAAATTGAATTAGCTCCAGCTATTCGGAATATGGTGAACTCTACATATGAGGGACTTGGCAGTGGAAAATGTCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCAGAGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTAGCAGCCTATGTTCTAGACCATCCATTGAGTGGGTGCCAGCGCCACTCGTTATTTGGTGATGGGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAAGCATTCAACTATCCCCGAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCGGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGCACCTTTGAATGGCTTTACTGGCCTCAAGCTCGCCAGCCATACTCCTCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGACATTGCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATAGAAGAAGTAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATTCTGTTTCCCAAATCCTGGACTTGCACCTCGATGAGATTGTCAGATCTCATTTATAA 1806 0.433 MSSAGVSTLTVVPTEPLLSPKAFPFPIPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTPLKDYGVTDGNVLHLVIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKQRIARREKQFDDPEEQELVCNGERLEDQRLIDDICCKHNDAAVHLFVRKKHVKVQRRPLELSIVAKDLIDKKKNDVNGNTNRRSYDVGKEDTIRKSDVIQRAVPRKPPGRDFILEPVIINHKIELAPAIRNMVNSTYEGLGSGKCPIRSAEGTGGAYFMLDSAEQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGCQRHSLFGDGKGFAGVPPTLMVKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSSETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEVVQAALDSVLPGTSEATLLDSVSQILDLHLDEIVRSHL* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2195 601 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 599 IPR044571 -
Gso3g2195 601 Pfam Phosphatidylinositol 3- and 4-kinase 294 545 IPR000403 -
Gso3g2195 601 SUPERFAMILY Protein kinase-like (PK-like) 437 596 IPR011009 -
Gso3g2195 601 Gene3D - 118 204 - -
Gso3g2195 601 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Gso3g2195 601 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 599 - -
Gso3g2195 601 Gene3D - 32 117 - -
Gso3g2195 601 CDD Ubl_ubiquitin_like 118 188 - -
Gso3g2195 601 Pfam Ubiquitin family 118 191 IPR000626 GO:0005515
Gso3g2195 601 Pfam Ubiquitin family 40 112 IPR000626 GO:0005515
Gso3g2195 601 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 285 580 IPR000403 -
Gso3g2195 601 SUPERFAMILY Ubiquitin-like 111 192 IPR029071 -
Gso3g2195 601 ProSiteProfiles Ubiquitin domain profile. 118 175 IPR000626 GO:0005515
Gso3g2195 601 SMART ubq_7 38 111 IPR000626 GO:0005515
Gso3g2195 601 SMART ubq_7 116 190 IPR000626 GO:0005515
Gso3g2195 601 SUPERFAMILY Ubiquitin-like 43 113 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2195 Gso-Chr3 47128809 47131691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2195 35 595 Acyl Lipid Metabolism Gene Families AT5G24240 54.754 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2195 - - gmx:100817301 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2152 19 50015946 50018873 Gso3g2195 3 47128809 47131691 GST
Gso3g2195 3 47128809 47131691 Gso7g0492 7 4945411 4948696 PCT
Gso3g2195 3 47128809 47131691 Gso16g0199 16 2318465 2322126 PCT
Gso7g0492 7 4945411 4948696 Gso3g2195 3 47128809 47131691 PCT
Gso16g0199 16 2318465 2322126 Gso3g2195 3 47128809 47131691 PCT