Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1927 ATGTCGGTTTCTGAGGTTGCTGTGAGACCGATTTTGAAAAAATCGGTGCATTGGCAAGGGCGTTGCTCTGGCGAATCTATCCGGATATATCTAACCGTAGACGGTGCGTTGAGACCAATGCGTGTATTGGAGTCTGACTCCATAGCTTCGGTGAAAATGAGGATTCAAGCATGCAAAGGAATCGCAGGGAAGAAGCACAAGCTGGTCTATGGTGGCAGAGAGCTTGCCCGCAAGGATGCACTCATCAAGGATTACGGTGTCACTGCTGGCAATGTTCTTCACTTGGTTCTCCGTCTCTCTGACATGATCTTCATTGTTGTGAGGACTGCCTGTGGGAAGGAGTTTGAGTTTCAGATTGATAGACATAGAAATGTGGGGTATCTTAAGCAACGCATCAAGAAGAAGAAGGGAGAAGGTTTCATTGACCTTGAGGGTGATCAAGAGCTTTTCTGTGGTGGGGAAGAGCTCCATGACCAGAGGCTCTTCCGTGATATATGCAACACTGATGATGCTGATGGTGTCATTCATTTGGTGGTTCGAAATTCAGCAAAGGTTAATGCCAAACCAGTTCACAAGGATTTGGAGCTTTCGGTTGTTGCTGATGGCTCTGCTGAGGGAGAGAAAGAGAATCAGGTGACACCAAAGATACCACCACCTGGTTTAGATTTCTGGTTGGAACCAGTTTTTGTAAATCCTAAGGTCAGTTTTTTTCCTTTTCTTTGGGACTTGATTGGCTCCACATTCGATGGTTTGAAGAAAGGGAATAACCCTATCAGATCCTCCGAGGGCACAGGTGGGACTTACTTCATGCAAGATTCAGCAGGTATGGAGTATGTTTCAGTTTTCAAGCCCATGGATGAGGAGCCAAATGCGGTTAATAACCCTCAAGGCCTACCGGTTTCCTCTAATGGCGAAGGTTTAAAAATAGGGACAAAGGTTGGAGAAGGAGCTATGAGAGAAGTTGCAGCATATATATTAGATCATCCAAAAGCTGGGCCACGGTTGGTGACAGGTGAAGCACTAGGCTTTGCTGGGGTTCCCCCAACTGTTATGGTCCAGTGCTTACACCAAGCCTTTAACCACCCAGATGGGTTTGATTACTCCTCAAAGCATTCCAAGGTGGGGTCCCTGCAGATGTTTATGAGCAATGATGGTAACTGTGAGGACCTTGGACCAGGGGCTTTTTCTGCGGAGGAGGTGCATAAGATCACCGTGCTTGATCTAAGAATGGCTAATGCAGATAGGCATGCTGGAAATATATTGTTCAGGAAAGAGGCAGGTGGTCACACTTTGCTCATTCCCATTGATCATGGCTACTGTCTTCCAGAGAAATTTGAGGATTGTACATTTGATTGGCTTTACTGGCCCCAAGCACGTCAGCCTTACTCCCCTGATACGGTTGATTATATCAAATCTCTGGATGCCGAGAAAGACATAGAGCTTCTGAAATATTTCGGGTGGGATGTCCCGGTTGAGTGTGCACGAACACTCCGAATCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCTTATGACATTGGAAGCATTATGTGTAGGGAAAATTTGAACAAAGAATCTGTCATCGAGGAGATTATTTGTGAAGCCCAAGAATCATTGCTACCTGGCATGGAGGAATCTGTGTTTCTTGAATCTGTCTCCCAGATCATGGATTCCCGCCTTGATAAGCTTTCAAAATAG 1710 0.4585 MSVSEVAVRPILKKSVHWQGRCSGESIRIYLTVDGALRPMRVLESDSIASVKMRIQACKGIAGKKHKLVYGGRELARKDALIKDYGVTAGNVLHLVLRLSDMIFIVVRTACGKEFEFQIDRHRNVGYLKQRIKKKKGEGFIDLEGDQELFCGGEELHDQRLFRDICNTDDADGVIHLVVRNSAKVNAKPVHKDLELSVVADGSAEGEKENQVTPKIPPPGLDFWLEPVFVNPKVSFFPFLWDLIGSTFDGLKKGNNPIRSSEGTGGTYFMQDSAGMEYVSVFKPMDEEPNAVNNPQGLPVSSNGEGLKIGTKVGEGAMREVAAYILDHPKAGPRLVTGEALGFAGVPPTVMVQCLHQAFNHPDGFDYSSKHSKVGSLQMFMSNDGNCEDLGPGAFSAEEVHKITVLDLRMANADRHAGNILFRKEAGGHTLLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYIKSLDAEKDIELLKYFGWDVPVECARTLRISTMLLKKGVERGLTPYDIGSIMCRENLNKESVIEEIICEAQESLLPGMEESVFLESVSQIMDSRLDKLSK* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1927 569 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 569 - -
Gso1g1927 569 Gene3D - 26 101 - -
Gso1g1927 569 CDD Ubl_ubiquitin_like 105 178 - -
Gso1g1927 569 Pfam Phosphatidylinositol 3- and 4-kinase 263 516 IPR000403 -
Gso1g1927 569 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 254 551 IPR000403 -
Gso1g1927 569 SMART ubq_7 103 180 IPR000626 GO:0005515
Gso1g1927 569 SMART ubq_7 27 98 IPR000626 GO:0005515
Gso1g1927 569 ProSiteProfiles Ubiquitin domain profile. 27 102 IPR000626 GO:0005515
Gso1g1927 569 SUPERFAMILY Protein kinase-like (PK-like) 410 567 IPR011009 -
Gso1g1927 569 SUPERFAMILY Ubiquitin-like 99 180 IPR029071 -
Gso1g1927 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 569 IPR044571 -
Gso1g1927 569 Pfam Ubiquitin family 105 181 IPR000626 GO:0005515
Gso1g1927 569 Pfam Ubiquitin family 39 99 IPR000626 GO:0005515
Gso1g1927 569 SUPERFAMILY Ubiquitin-like 32 100 IPR029071 -
Gso1g1927 569 Gene3D - 102 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1927 Gso-Chr1 55965710 55968848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1927 1 568 Acyl Lipid Metabolism Gene Families AT5G24240 55.536 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1927 - - gmx:100787492 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1927 1 55965710 55968848 Gso1g1927 1 55965710 55968848 ECH
Gso1g1927 1 55965710 55968848 Gso7g0492 7 4945411 4948696 ECH