Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1740 ATGGACAATCAGAAGGGAACGAGTATTAGTTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAGAACACCAAGAAACTACAATCCAAGGCTTTCCGAATCCGAGGTTATAAATGGCGGATTCGTTTGTATCCAATAATGAAGAATGTTGACCATTTTTCATTATATTTGATGATTGCGGATTCTTTACCTCCGTATGGATGGAACAGAAATACGTATTTCAAGTTGGCTCTAGTTAATCAATTGGATGTCAATAAGTCAGTTGTAAAGGAGACTCAGCAGAAGTTCAATGGTGGATATCGTAGCTGGGGCTCATCTTTTGTGAATCTTAGTGACTTCTATGACTCTAAACAAGGCTATCTTGTGAATGACACATGCATCATTGAAGCTCATGTTTGTGTCTCAGATCTTAGCACTCTTGAAGTTGAAGCTAACAATTTGAACAAAATCACTCCAACCAAAGACTCTAAATTAGGTGATCAAGCAGCAAGTAATTCAGAATCCACACAGCAGGAAGATGATAAAGAAACAGAAACAGAAATATCAGATGAGAGTGAGACACTTAGTTCTTCAACCTGTGGGTCTAGTCAAACAGAAGGGGAAGTTCAAAGTTCAGATTTGACACTAAAAGACCTTTTAGATTTGGCGAGTTTAGGAAAAGAAGAGGCTGCTTTTGTTCCACTGTTGGAGGAGGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGGAAAAGTTCAAGATGGTTTAAACTATGGGCATTCACATCTTTGGGCCAAGTTCTGCATTTACTCAAGACAAGTAAGGTGAAGGATATGAATGAAGATGCATGCAATCGCCTTCGAGGTTTATGGGAAGAACTTGTTAAGCACTCCGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGGTATGGAAGCTCATTTGGATAAAACAGGTGAAGTGAATAAACTCAAAGACAGTGTGGTTGCTTTGGAGATTAAAATGAAGAAGCTGAGGGGAGAATTGGAAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGGGCCTTGACTGAAGCACGAAAAGGTTTCATAGAGATGGATTTGAGTGCTGATTTAGGATATGCCATGTTTTAG 1134 0.3968 MDNQKGTSISFETFTWKIENFSKQNTKKLQSKAFRIRGYKWRIRLYPIMKNVDHFSLYLMIADSLPPYGWNRNTYFKLALVNQLDVNKSVVKETQQKFNGGYRSWGSSFVNLSDFYDSKQGYLVNDTCIIEAHVCVSDLSTLEVEANNLNKITPTKDSKLGDQAASNSESTQQEDDKETETEISDESETLSSSTCGSSQTEGEVQSSDLTLKDLLDLASLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTSKVKDMNEDACNRLRGLWEELVKHSGFQLSWLEPYVQSALGMEAHLDKTGEVNKLKDSVVALEIKMKKLRGELEAAEAEFEVARRALTEARKGFIEMDLSADLGYAMF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1740 377 Pfam MATH domain 18 135 IPR002083 GO:0005515
Gso3g1740 377 MobiDBLite consensus disorder prediction 186 204 - -
Gso3g1740 377 SMART math_3 13 115 IPR002083 GO:0005515
Gso3g1740 377 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 158 IPR008974 GO:0005515
Gso3g1740 377 Coils Coil 321 362 - -
Gso3g1740 377 SUPERFAMILY TRAF domain-like 13 137 - -
Gso3g1740 377 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 357 - -
Gso3g1740 377 MobiDBLite consensus disorder prediction 152 204 - -
Gso3g1740 377 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
Gso3g1740 377 CDD MATH 13 134 IPR002083 GO:0005515
Gso3g1740 377 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 357 - -
Gso3g1740 377 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1740 Gso-Chr3 43234447 43236838 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1740 - - gmx:102664376 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1710 19 46001265 46003395 Gso3g1740 3 43234447 43236838 GST
Gso3g1740 3 43234447 43236838 Gso10g1110 10 32295040 32322735 PCT
Gso2g1422 2 27350923 27353109 Gso3g1740 3 43234447 43236838 PCT
Gso10g0806 10 11760028 11762301 Gso3g1740 3 43234447 43236838 PCT