Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1710 ATGATGGCAGCTACTAGAATGGATAATAAGAGGAGACCGAGTATTAATTTTGAGACCTTCACGTGGAAAATTGAAAATTTCTCTAGACAGAACACCAATAAACTAAAATCCAAGGCTTTCCAAATCCGAGGTTATAAATGGCAGATTCGTTTGTATCCATTAGTGAAAAATGTTGACCATTTTTCATTACGTTTGATGGTTGCGGATTCTTTACCACCGTATGGATGGGACAGAAATACGTATTTCAAGTTGGCTCTAATTAATCAATTGGATGGCAGTAAATCAGTGGTAAAAGAGACTGAACAGAAGTTCAAAGGTGGATTTCGTGAGTGGGGCTCATTTTTTGTGAATGTTAGTGACTTCTATGACCCTAAACAAGGCTATCTTGTGAATGATACATGCATCATTGAAGCTCATGTTTGTGTCTCTGATCTTAGCACTCTTCAAGCTAACAACTTGAACATAATTACTCCAACCAACGACCTTAAATTTGGTGATCAATCAGCAAGACATTCAGAAACATCAGAAGGGGAAGTTCAAGGTTCAGATTTGACACTAAGGGACCTTCTAGATTTGGAGTGCTTAGCAAAAGAAGGAGCAGATTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGTAAAAGTTCTAAACTGTTCAAACAATGGGCATTCACATCTTTGGGTGAAGTTCTGCATGTACTCAAGATAAGTAAGGTGAAGGATATGAATGAAGATGCATTCAATCACCTTCAAGGTTTATGGGAGGAACTTGTTAAGCGGTCCGGATTTCAATTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGCTATGAAAGCTCAGGTGGAAAAAGCAGCTGAAGTGAATAAACTCAAAGACAATGTGGTTGATTTGGAGGTTAAAATGAAGAAGTTGAGGGGAGAGTTGAAAGCTGCAGAAGCTGAGTTTGAGGTAGCAAGGAGAGCCTTGGCTGAGGCAAGAAAAGGTTTCATAGAGATAGAGGTGGATTTGAATGCTGAATTAGGCTATGCCATGTTTTAA 1065 0.3953 MMAATRMDNKRRPSINFETFTWKIENFSRQNTNKLKSKAFQIRGYKWQIRLYPLVKNVDHFSLRLMVADSLPPYGWDRNTYFKLALINQLDGSKSVVKETEQKFKGGFREWGSFFVNVSDFYDPKQGYLVNDTCIIEAHVCVSDLSTLQANNLNIITPTNDLKFGDQSARHSETSEGEVQGSDLTLRDLLDLECLAKEGADFVPLLEEACIWHPSLIRSQSKSSKLFKQWAFTSLGEVLHVLKISKVKDMNEDAFNHLQGLWEELVKRSGFQLSWLEPYVQSALAMKAQVEKAAEVNKLKDNVVDLEVKMKKLRGELKAAEAEFEVARRALAEARKGFIEIEVDLNAELGYAMF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1710 354 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 333 - -
Gso19g1710 354 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4 147 IPR008974 GO:0005515
Gso19g1710 354 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 333 - -
Gso19g1710 354 SUPERFAMILY TRAF domain-like 19 143 - -
Gso19g1710 354 Pfam MATH domain 24 141 IPR002083 GO:0005515
Gso19g1710 354 ProSiteProfiles MATH/TRAF domain profile. 17 140 IPR002083 GO:0005515
Gso19g1710 354 CDD MATH 19 140 IPR002083 GO:0005515
Gso19g1710 354 Coils Coil 296 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1710 Gso-Chr19 46001265 46003395 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1710 - - gmx:102668571 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1710 19 46001265 46003395 Gso3g1740 3 43234447 43236838 GST
Gso19g1710 19 46001265 46003395 Gso10g1110 10 32295040 32322735 PCT
Gso2g1422 2 27350923 27353109 Gso19g1710 19 46001265 46003395 PCT
Gso10g0806 10 11760028 11762301 Gso19g1710 19 46001265 46003395 PCT