Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1110 ATGACTCTCATGACTCCTCCTCCAATGGATCAGCAACAGCAGCAGCAGGAGCACGATGAGATGCTGGTTCCTCGCTCTGACCTGCCTGAAGGTCCTCAACCTATGGAAGCAGCCCAAGCAGAAATCCCAAGTACAGTGGATGCTCCAACAGTGGATGCTCCAACAGTGGATGATACACCAACTGCAAAATTCACTTGGACCATTGACAATTTTTCTAGTATTTCCCAAAAACTATTTTCTGACATTTTCTGTGTAGGGGGCTATAAGTGGCGGATACTTATATTTCCAAAGGGAAATGGTGCTGGCCATCTGTCAATGTATATAGATGTTGCAGATTCAGCTACATTGCCCTATGGTTGGAGTAGATATGCCCACTTCAACTTGACTGTTGTTAATCAAATTCATAGTAAATATTCAATAAGAAAAGATTCACAACATCAGTTCAATGCACGTGAGAGCGACTGGGGTTTCATTAATTTCATGCCACTTGCTGAATTGTATGATCCTGCTAGAGGTTATCTTGTGAATGATACATGCATAGTTGAAGCTGACATTTCTGTGCGTAAAGATATGGATTGGTCATATGATTCAAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGGCTGTGTACCATATGCCCACGACTGAAAATGATATGCCATCAGTGAGCATCCCTCTGGCATTACAAAGTTTGTTTTACAAATTGCAGTATAGTGACACTAGTGTGGCAACGAAAGAGTTAACAACGTCTTTTGGATGGGATACATATGATTCGTTCATGCAGCATGATGTCCAAGAGCTTAATAGGGTTCTTTGTGAAAAGCTAGAAGGCAAAATGAAGGGAACTGTTGTGGAAGGCACTATACAGCAATTGTTTGAAGGACACCATATGAACTATATTGAATGCATAAATGTGGATTATAAATCAACAAGGAAAGAATCATTTTATGATCTTCAGCTTGATGTCAAAGGCTGTAAGGACGTATATGCTTCTTTTGATAAGTATGTGGAAGTGGAACAACTTGAGGGTGATAACAAGTATCATGCTGAGCACTATGGTTTACAGGATGCTAGGAAGGGTATGTTGTTCATTGATTTCCCACCTGTTCTTCAGCTTCAGTTAAAACGGTTTGAGTACGATTGTACGCGAGACACTATGGTAAAGATCAATGACCGCTATGAGTTCCCCTTGCAACTAGATCTTGATATGGATAATGGGAAATATCTATCTCCTGACGCAGACAGAAGTATTCGCAATTTTTATACACTTCACAGTGTTTTGGTTCACAGTAGTGGGGTGCATGGCGGACACTACTATGCTTACATTAGGCCAACACTATCAAATCAGTGGTTTAAATTTGACGATGAGCGAGTAACAAAAGAAGAATCCAAGAGGGCTTTGGAAGAACAGTATGGTGGTGAAGAAGAGTTACCTTGTATAAATCCTGGCTTCGACCACTCTCCTTTTAGATTTACAAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATAAAATAATTTGTAATGTGGACGAGAAGGACATTGCTGAACACCTTAGAATGAGATTAAAGAAAGAACAAGACGAAAAAGAGCTGAAGAGGAAGGAGAAGGCTGAGGCTCACTTGTACACCACCATAAAGGTTGCTTGTGATGAAGATCTACGTGAACAGATTGGAAATAATATACACTTTGATCTTGTGGATTATGATAAAGTACGAAGTTTTCGTGTTCAAATACACATGCCTTTTATGGTTTTCAAGGAAGAAGTTGCCAAAGAGTTCGGCATACCCATCCAGTATCAACGTTTTTGGTTGTGGGCAAAGCGCCAAAACAACACATATAGGCCAAATAGAACACTGACACCTCAGGAAGAAGCACAATCAGTTGGACTGCTAAGAGAAGTTTCCACTAAAGCAAATAATGCAGCGCTGAAGTTATTTTTGGAACTAGAAATGGGGCAGGATTTGCGGCCTATTCCTCCTCCAGAGAAGTCAAAAGAGAATCTCTTGCTTTTCCTTAAACTTTATGAACCTTCAAATGAGAAGCTTCGGTATGTTGGGCGACTTTTTGTGAATAGTAGTGGGAAGCCAGAAGATATACTGGTAAAACTAAATGAAATGGCCGGATATGATCCTGATCAAGATATAGACATGTTTGAGGAGATCAAGTTTGTGCCTAATGTCATGTGTGAACGGGTTGACAAGAAATCCACATTCCGTGAGAGTCAGCTTGAGGATGGTGATATTATTTGCTTCCAAAAGTCCTCCCCCCAAACTGGAAGCGGAGAGCGATATCGCTATCCAGATGTTCCTTCTTTCTTGGAATATGTGCATAACCGTTTGGTTGTTCGCTTTAGGACTTTGGAGAAACCAAAGGAGGATGAATTTAGTCTTGAGCTGTCAAAGCTTGACTCCTATGACAATGTTGTTGAAGAAGTTGCTCAACATATTGGTTTGCATGATCCTTCTAAAATTAGACTCACATCTCATAACTGCTACTCCCAGCAACCTAAAGCACAGTCTATCAAGTTCCGAGGAATGGAACATTTGACAGACATGCTAATTCACTCTAATCAGACTTCTGATATTCTATACTATGAAGTATTGGATATCCCTCTGCCAGAATTGCAATGCCTAAAAACTCTTAAAATTACTTTCCATCATGCTACCAAGGATGAAGTTGTGATTCATACTATTAGATTACCGAGACATAGTACTGTGTCAGATGTAATTAATGATCTTAAATCAAAGGTAGATCTATCACATCCTGATGCAGAACTTAGATTGCTTGAAGTTTTCTATCACAAGATTTATAAGATTTTCCGTGTCAATGAAAAGATTGAGAACATTAATGATCAATATTGTGCACTTCGAGCAGAGGAGATTCCTGAAGAAGAGAAAAACCTTGGCTCGCATGATCGGTTGATCCATGTTTATCATTTCTTGAAAGACACAACTCAAAATCAGCAAGTTCAGAATTTTGGACATCCTTTTTTATTGGTTATCCGTGAGGGTGAGACATTGGCTGAAGTCAAATTGCGAATACAGAAAAAGTTGCAAGTTCCAGATGAGGAGTTTTCAAAGTGGAAGTTTGCATTTTTGTCGTTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTGTATCCACTCGGTTTCAGAGAAGGGATATCTATGGTGCATGGGAGCAATATCTCGGACTGGAACACATCGACAGTGCTTCAAAAAGGTCGAACACAGCCAATCAGAATCGTCACGAGAAGGCTGTAAAAATCTATGATTAG 3366 0.3972 MTLMTPPPMDQQQQQQEHDEMLVPRSDLPEGPQPMEAAQAEIPSTVDAPTVDAPTVDDTPTAKFTWTIDNFSSISQKLFSDIFCVGGYKWRILIFPKGNGAGHLSMYIDVADSATLPYGWSRYAHFNLTVVNQIHSKYSIRKDSQHQFNARESDWGFINFMPLAELYDPARGYLVNDTCIVEADISVRKDMDWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHISYFRKAVYHMPTTENDMPSVSIPLALQSLFYKLQYSDTSVATKELTTSFGWDTYDSFMQHDVQELNRVLCEKLEGKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVEQLEGDNKYHAEHYGLQDARKGMLFIDFPPVLQLQLKRFEYDCTRDTMVKINDRYEFPLQLDLDMDNGKYLSPDADRSIRNFYTLHSVLVHSSGVHGGHYYAYIRPTLSNQWFKFDDERVTKEESKRALEEQYGGEEELPCINPGFDHSPFRFTKHSNAYMLVYVRESDKDKIICNVDEKDIAEHLRMRLKKEQDEKELKRKEKAEAHLYTTIKVACDEDLREQIGNNIHFDLVDYDKVRSFRVQIHMPFMVFKEEVAKEFGIPIQYQRFWLWAKRQNNTYRPNRTLTPQEEAQSVGLLREVSTKANNAALKLFLELEMGQDLRPIPPPEKSKENLLLFLKLYEPSNEKLRYVGRLFVNSSGKPEDILVKLNEMAGYDPDQDIDMFEEIKFVPNVMCERVDKKSTFRESQLEDGDIICFQKSSPQTGSGERYRYPDVPSFLEYVHNRLVVRFRTLEKPKEDEFSLELSKLDSYDNVVEEVAQHIGLHDPSKIRLTSHNCYSQQPKAQSIKFRGMEHLTDMLIHSNQTSDILYYEVLDIPLPELQCLKTLKITFHHATKDEVVIHTIRLPRHSTVSDVINDLKSKVDLSHPDAELRLLEVFYHKIYKIFRVNEKIENINDQYCALRAEEIPEEEKNLGSHDRLIHVYHFLKDTTQNQQVQNFGHPFLLVIREGETLAEVKLRIQKKLQVPDEEFSKWKFAFLSFGRPEYLQDSDIVSTRFQRRDIYGAWEQYLGLEHIDSASKRSNTANQNRHEKAVKIYD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1110 1121 SUPERFAMILY Cysteine proteinases 199 553 IPR038765 -
Gso10g1110 1121 Gene3D Cysteine proteinases 201 529 - -
Gso10g1110 1121 Coils Coil 544 564 - -
Gso10g1110 1121 ProSiteProfiles MATH/TRAF domain profile. 61 185 IPR002083 GO:0005515
Gso10g1110 1121 CDD MATH 63 185 IPR002083 GO:0005515
Gso10g1110 1121 Pfam Ubiquitin carboxyl-terminal hydrolase 204 525 IPR001394 GO:0004843|GO:0016579
Gso10g1110 1121 CDD peptidase_C19C 202 530 - -
Gso10g1110 1121 Gene3D - 689 807 - -
Gso10g1110 1121 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 200 IPR008974 GO:0005515
Gso10g1110 1121 MobiDBLite consensus disorder prediction 1 38 - -
Gso10g1110 1121 SMART math_3 63 166 IPR002083 GO:0005515
Gso10g1110 1121 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 205 220 IPR018200 GO:0004843|GO:0006511
Gso10g1110 1121 MobiDBLite consensus disorder prediction 1 19 - -
Gso10g1110 1121 Pfam MATH domain 68 186 IPR002083 GO:0005515
Gso10g1110 1121 PANTHER UBIQUITIN-SPECIFIC PROTEASE 12-RELATED 15 1048 - -
Gso10g1110 1121 SUPERFAMILY TRAF domain-like 58 190 - -
Gso10g1110 1121 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 629 882 IPR024729 -
Gso10g1110 1121 Gene3D - 808 905 - -
Gso10g1110 1121 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 1048 - -
Gso10g1110 1121 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 204 528 IPR028889 -
Gso10g1110 1121 Pfam Ubiquitin-specific protease C-terminal 892 1100 IPR029346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1110 Gso-Chr10 32295040 32322735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1110 311 493 Miscellaneous Gene Families AT2G24640 28.191 1.62e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1110 K11838 - gmx:100337654 2243.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1710 19 46001265 46003395 Gso10g1110 10 32295040 32322735 PCT
Gso3g1740 3 43234447 43236838 Gso10g1110 10 32295040 32322735 PCT