Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1715 ATGGAGTTGATGGGGTGTGGAAAGCTTAGGGGGTGCCTTGTTCTTGTGTTATTTGGTGCACTGTTGGTGGGTTTAGTGAGTGGAATTGGAATTAATTGGGGCACACAATTAACACACCCTTTGCCAGCATCCACTATAGTGAAAATGCTGAAGGACAATGGTATTCAGAAGGTTAAGCTTTTTGATGCTGACCCTGATATTCTAAATGCTCTTAAGAAGTCTGGGATTCAGGTGATGGTGGGTATACCAAATGACATGCTCTACACACTAGCTAACAGTATGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCACATGTCTCGGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTACCTTTGAAGCCACAACACTTCCAGCTCTTCAAAACATCCAATTAGCCCTTGTGAAAGCTGGTTTAGGCAATCAGGTTAAAGTCACTTGCCCTCTAAACGCTGACGTGTATCAGAGCGCACAAGTACCTTCTGATGGCGACTTCAGGCAAGACATCCATGATCTCATGGTGCAGATTGTCAAGTTCTTGAGCCAGAACAACGCTCCATTTACTGTGAACATCTATCCTTTCATCAGCCTCTATTCAGACCCCAATTTTCCTGTTGACTATGCCTTCTTCAATGGCTTTCAGTCTCCTATAAGTGACAACGGAAGGATCTATGACAATGTCTTTGACGCCAACCATGATACTCTAGTGTGGGCATTGCAGAAGAATGGTTTTGGAAACATGCCTATAATTGTGGGAGAAGTTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAATATGCACAACGGTTTAACCAAGGTTTCATGTCGCGCTACATTGCCGGAAAGGGAACACCAATGAGGCCTGGTCCTATGGATGCTTACCTGTTTAGTCTCATAGATGAAGATTTCAAAAGCATTCAGCCGGGTAATTTTGAAAGACATTGGGGGTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAGCATAGGATCAAGAGCCAATGGCTTAGTAGCTGCTACTGGGGTGGCATATCTGCCCAAAAAGTGGTGCATTTTGAAAACCTCAGCAAACCTCAATAGTGATCAAGTGGCACCAAGTGTGTCTTATGCTTGTCAAAATGCAGATTGCACAAGTCTTGGATATCAAACTTCATGTGGTGGTTTAGATATTCGTGGTAATATTTCTTATGCATTCAATAGCTACTTCCAAGTGAATGACCAGATTGACAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAAAGATCCTTCAACTGGAGATTGCAAGTTCAAAATCATGATTCAGACAGATTCTGCTGGTCTACATGGGAATGGGAGAATTTGGTCTCTCAGAATAGTACTCTTTGTACTTTTGTTTTTCACTCTTATGTGA 1443 0.4283 MELMGCGKLRGCLVLVLFGALLVGLVSGIGINWGTQLTHPLPASTIVKMLKDNGIQKVKLFDADPDILNALKKSGIQVMVGIPNDMLYTLANSMQAAEKWVSKNVSAHVSVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQLALVKAGLGNQVKVTCPLNADVYQSAQVPSDGDFRQDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYSDPNFPVDYAFFNGFQSPISDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYIAGKGTPMRPGPMDAYLFSLIDEDFKSIQPGNFERHWGLFYYDGQPKYQLSIGSRANGLVAATGVAYLPKKWCILKTSANLNSDQVAPSVSYACQNADCTSLGYQTSCGGLDIRGNISYAFNSYFQVNDQIDSACKFPGLSVVTDKDPSTGDCKFKIMIQTDSAGLHGNGRIWSLRIVLFVLLFFTLM* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1715 480 Gene3D - 361 457 - -
Gso17g1715 480 SUPERFAMILY (Trans)glycosidases 29 343 IPR017853 -
Gso17g1715 480 Pfam Glycosyl hydrolases family 17 29 343 IPR000490 GO:0004553|GO:0005975
Gso17g1715 480 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Gso17g1715 480 Gene3D Glycosidases 28 350 - -
Gso17g1715 480 Pfam X8 domain 363 432 IPR012946 -
Gso17g1715 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 457 IPR044965 GO:0004553|GO:0005975
Gso17g1715 480 SMART X8_cls 363 447 IPR012946 -
Gso17g1715 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 16 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1715 Gso-Chr17 32422522 32428420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1715 13 456 Glycoside Hydrolase AT4G31140 71.205 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1715 K19893 - gmx:100775918 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1063 14 18455068 18458620 Gso17g1715 17 32422522 32428420 GST
Gso17g1715 17 32422522 32428420 Gso6g1243 6 12080194 12082800 PCT
Gso4g0629 4 6127764 6132107 Gso17g1715 17 32422522 32428420 PCT
Gso6g0632 6 5860427 5865017 Gso17g1715 17 32422522 32428420 PCT