Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1243 ATGGCTCCAACCGAGTTCTTCATGTGGGGGCTATGTTTGATATTGGTCTTTGCTCATTACCAAGGTGCCCAAGGGGAAGAGTCTATACCAGGTCTTGGTATCAATTGGGGTGCATTAGCATCCCACACTTTGAATCCTAACGTAGTGGTGAATATGTTGAAGGACAACGGGATCAAGAAGGTGAAACTTTTTGATGCAGATTCTTGGACCCTGAGTGCTTTGTCTGGTACAGACATTGAAGTCATGGTAGGAATTCCTAATGATCAATTGAGTAAATTTGCTGGAAGTAGCGGAGATGCTGAAGCTTGGGTTAGAGAAAATCTCACCAAACATATTCATAATCATCATGGGAGCGTCAACATCAGACACGTATCTGTTGGAAATGAGCCATTCATGAAAGGTTACAAGGGTGCATATGTGAAGACCACATTCCCAGCAATGCAAAATATTCAAAAGGCCATCGACAAGGCTGGTCTTGGAGACACAGTGAAGGTGACAACGGCTTTGAATGCCGATGTTTACGAGTCTGCTTCAGACAAGCCATCAGATGGAGATTTTCGGAGTGACATTTACGATGCCATAAAACAAATACTAAGTTTGCTTCACGAAAGGAACTCACCATTTCTTGTCAACATATACCCTTTCCTCAGTCTCTACCAGAACGACAATTTTCCTGAAGAATTTGCATTCTTTGATGGTCAAGGCAGAACAATTCAAGACAAAGATGCACAATACAGCAATGTCTATGATGCAAATTTGGACACCCTTGTTTGGTCATTGAGAAAAGCTGGCTACCCTGACTTGAGAATTGTGGTTGGTGAAATTGGATGGCCAACTGATGGCAACAAAAATGCTAATAACTACAATGCAAAAAGGTTCTACCAAGGACTACTCAAGAAAATGGTACACAAGAAAGGAACTCCTCTTCGCCCCGGAGCCATGGAGATGTATCTGTTTTCTCTTACTGATGAGAACTTGAAGAGCATTGAGCCTGGCAACTTTGAGCGTCATTGGGGAATTTTTGGCTACGACGGAAGGCCTAAGTTTCCCATTGATTTTTCTGGTCAGGGACAGGACAAATGGCCAGTGGCAGCCAAAGGTGTTGTTTACCAAGAACGTCAATGGTGTGTCCTAAGTAGTGATGTTAAGAACTTGAGTTTGGTGCCAAGTGCATTGGACTATGCTTGTGCTGGTGCTGATTGCACAAGCTTAGGATTTGGTTGTTCTTGTGATAAGTTAGACCTTGCTGGCAATGCTTCATTTGCTTTCAACCAATATTTTCAAACAAGGGACCAAAGTGTTGAGGCGTGTGATTTCAATGGAATGGGAACTATTGTGAAACAGGATCCATCAAAGGGAAGTTGCTTGTTCCCTATAGAAATTGAGAGCAGTGGTGACATGGTTAGAGCAATGCGTGCGATTGGAAGCATTTTGATTGGATTGGCATTGTTTTTCGTAACATTTACGTAG 1470 0.4265 MAPTEFFMWGLCLILVFAHYQGAQGEESIPGLGINWGALASHTLNPNVVVNMLKDNGIKKVKLFDADSWTLSALSGTDIEVMVGIPNDQLSKFAGSSGDAEAWVRENLTKHIHNHHGSVNIRHVSVGNEPFMKGYKGAYVKTTFPAMQNIQKAIDKAGLGDTVKVTTALNADVYESASDKPSDGDFRSDIYDAIKQILSLLHERNSPFLVNIYPFLSLYQNDNFPEEFAFFDGQGRTIQDKDAQYSNVYDANLDTLVWSLRKAGYPDLRIVVGEIGWPTDGNKNANNYNAKRFYQGLLKKMVHKKGTPLRPGAMEMYLFSLTDENLKSIEPGNFERHWGIFGYDGRPKFPIDFSGQGQDKWPVAAKGVVYQERQWCVLSSDVKNLSLVPSALDYACAGADCTSLGFGCSCDKLDLAGNASFAFNQYFQTRDQSVEACDFNGMGTIVKQDPSKGSCLFPIEIESSGDMVRAMRAIGSILIGLALFFVTFT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1243 489 Gene3D Glycosidases 31 360 - -
Gso6g1243 489 SUPERFAMILY (Trans)glycosidases 32 353 IPR017853 -
Gso6g1243 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 268 281 IPR000490 GO:0004553|GO:0005975
Gso6g1243 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 4 471 - -
Gso6g1243 489 Pfam X8 domain 374 444 IPR012946 -
Gso6g1243 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 471 IPR044965 GO:0004553|GO:0005975
Gso6g1243 489 SMART X8_cls 374 457 IPR012946 -
Gso6g1243 489 Pfam Glycosyl hydrolases family 17 32 353 IPR000490 GO:0004553|GO:0005975
Gso6g1243 489 Gene3D - 368 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1243 Gso-Chr6 12080194 12082800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1243 29 469 Miscellaneous Gene Families AT5G64790 56.009 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1243 - - gmx:100794658 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1063 14 18455068 18458620 Gso6g1243 6 12080194 12082800 PCT
Gso17g1715 17 32422522 32428420 Gso6g1243 6 12080194 12082800 PCT