Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3573 ATGTTTCCTTTCGGGCAAAAGGGTCAAAAGATAAAGGGGACTATGGTGGTTATGCAGAAGAATGTGTTGGATATCAACAGCATCACCAGTGTTGGAGGGATCGTTGACCAAGGCTTAGGCTTCATAGGCAGTGCAGTCGATGCACTTACTTTTGCAGCCACCAAAATCTCCATCCAGTTGATTAGTGCTACCAAGGCTGATGGTGGGAAAGGAAAAATTGGAAAGAGTACAAATTTAAGAGGAAAGATAACATTACCAACCTTGGGAGCTGGCGAACAAGCATACGATGTTAATTTTGAATGGGACAGTGACTTCGGAATTCCCGGTGCATTTTATATTAAGAACTTCATGCAAAATGAGTTCTACCTCAAGTCTCTAATTCTCGAAGACATTCCAAACCACGGAACCATTCACTTCGTATGCAACTCCTGGGTTTACAATTCAAAAAACTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACACCAGCTCCACTTTTGAAGTACAGAGAAGAAGAATTGAAGAATGTAAGAGGGGATGGAACTGGAGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTCTACAATGACTTGGGCAACCCGGATAGCGGTGATAAATATGCACGCCCCGTTCTTGGTGGTTCAGCATTACCTTACCCTCGCAGAGGAAGAACCGGAAGAGGAAAAACTAGAAAAGATCCCAACAGTGAGAAGCCGAGCGATTTTGTTTACCTTCCAAGAGATGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTCGCTTATGGAATCAAATCTGTATCCCAAGATGTCTTGCCTGTCTTGACTGATGCATTCGATGGAAATATTTTGAGCCTTGAGTTTGATAATTTTGCTGAAGTGCGCAAACTCTATGAAGGTGGAGTTACACTACCTACAAACTTTCTTAGCAAGATCGCCCCTATACCAGTGATCAAGGAAATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTGATGCAGGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACGATTGCTGGTTTAAATCCAAATGTCATTAAGATTATAGAGGAGTTCCCACTAAGTAGCAAGCTAGATACTCAAGCCTATGGTGATCATACCTGTATAATAGCAAAAGAACATTTGGAGCCTAACTTAGGTGGGCTCACTGTTGAGCAGGCTATCCAAAACAAGAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCTTATTTGAGGAAAATAAATGCAAATACCACAAAGACTTATGCTACAAGAACCATATTTTTCTTGAAAGATGATGGAACTTTGACACCATTGGCCATTGAGTTAAGTAAGCCACATCCTCAGGGTGAAGAATATGGTCCTGTTAGCGAAGTCTACGTGCCTGCCAGCGAAGGAGTGGAAGCTTATATTTGGTTACTGGCAAAGGCTTATGTTGTTGTGAATGATGCATGCTACCATCAAATCATTAGCCATTGGCTAAGCACTCATGCAATTGTTGAGCCATTTGTCATAGCAACAAACAGGCAACTGAGTGTGGTTCACCCTATTTACAAACTTCTGTTTCCTCACTACCGTGACACCATGAATATTAATTCACTTGCCCGGAAAGCCCTGGTCAATGCAGATGGTATTATAGAGAAAACATTCTTGTGGGGTAGGTACTCTATGGAAATGTCCGCTGTCATTTACAAGGACTGGGTTTTCACTGATCAAGCATTACCTAATGATCTTGTAAAGAGAGGAGTTGCTGTTAAGGACCCATCTGCTCCCCATGGAGTTCGTCTTTTGATTGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCCATCAAGTCCTGGGTGCAAGAATATGTCTCATTCTACTACAAGTCAGATGAGGAACTCCAAAAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTAGAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCAAAAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTATCCTCATATGGATTGCTTCAGCCCTTCATGCTGCTGTTAACTTTGGACAGTATCCATATGGAGGTTTAATCCTAAACAGGCCAACTATTAGCAGGAGATTCATGCCTGAAAAGGGGTCTCCTGAATATGATGCGTTGGCTAAGAACCCTGAGAAGGAGTTTTTGAAGACTATTACTGGCAAGAAGGAGACCCTCATTGACCTTACAGTTATAGAAATCTTGTCAAGGCACGCATCTGATGAGTTCTACCTTGGGCAGAGAGATGGTGGTGACTACTGGACTTCTGATGCCGGTCCATTAGAGGCATTTAAGAGGTTTGGAAAGAAGCTTGAAGAGATTGAAAAGAAGCTTATAGAGAAGAACAAAGATGAGACATTGAGAAACCGCTATGGGCCAGCTAAAATGCCTTACACTCTGCTCTATCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2562 0.4235 MFPFGQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISATKADGGKGKIGKSTNLRGKITLPTLGAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVRKLYEGGVTLPTNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINANTTKTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3573 853 Pfam PLAT/LH2 domain 64 158 IPR001024 GO:0005515
Gso11g3573 853 PANTHER LIPOXYGENASE 6 853 IPR000907 GO:0016702|GO:0046872
Gso11g3573 853 PRINTS Lipoxygenase signature 490 507 IPR013819 GO:0016702|GO:0046872
Gso11g3573 853 PRINTS Lipoxygenase signature 508 525 IPR013819 GO:0016702|GO:0046872
Gso11g3573 853 PRINTS Lipoxygenase signature 528 548 IPR013819 GO:0016702|GO:0046872
Gso11g3573 853 PRINTS Plant lipoxygenase signature 129 147 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 155 176 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 194 210 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 226 245 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 293 314 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 338 354 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 377 396 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 443 467 IPR001246 GO:0016491
Gso11g3573 853 PRINTS Plant lipoxygenase signature 765 779 IPR001246 GO:0016491
Gso11g3573 853 SMART LH2_4 9 160 IPR001024 GO:0005515
Gso11g3573 853 Pfam Lipoxygenase 172 836 IPR013819 GO:0016702|GO:0046872
Gso11g3573 853 ProSitePatterns Lipoxygenases iron-binding region signature 2. 535 545 IPR020834 GO:0016702|GO:0046872
Gso11g3573 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 508 522 IPR020833 GO:0016702|GO:0046872
Gso11g3573 853 Gene3D - 263 351 IPR027433 -
Gso11g3573 853 Gene3D - 164 262 - -
Gso11g3573 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 162 853 IPR013819 GO:0016702|GO:0046872
Gso11g3573 853 Gene3D - 352 485 - -
Gso11g3573 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 163 IPR036392 GO:0005515
Gso11g3573 853 ProSiteProfiles PLAT domain profile. 34 159 IPR001024 GO:0005515
Gso11g3573 853 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 6 853 - -
Gso11g3573 853 SUPERFAMILY Lipoxigenase 164 853 IPR036226 -
Gso11g3573 853 CDD PLAT_LH2 10 160 IPR042057 -
Gso11g3573 853 Gene3D PLAT/LH2 domain 1 163 - -
Gso11g3573 853 MobiDBLite consensus disorder prediction 213 249 - -
Gso11g3573 853 Gene3D - 486 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3573 Gso-Chr11 51445908 51452195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3573 9 853 Acyl Lipid Metabolism Gene Families AT1G55020 58.188 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3573 K15718 - gmx:547836 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0233 15 2131563 2135923 Gso11g3573 11 51445908 51452195 GST
Gso11g3573 11 51445908 51452195 Gso7g0057 7 504723 515607 PCT
Gso11g3573 11 51445908 51452195 Gso8g1571 8 15326626 15331261 PCT
Gso8g1568 8 15264948 15270531 Gso11g3573 11 51445908 51452195 PCT