Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1568 ATGTATTCAGGGGTGAAAGGGTTGTTCAACAGAAGCCAGAAGGTGAAGGGAACGGTGGTGTTGATGCGTAAGAATGTGCTTGACATCAACAGCATAACGAGTGTGAGAGGGCTTATTGGCACCGGCATCAACATAATTGGCTCAACAATTGATGGTCTTACTTCCTTCTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTACGTCGATACCAACATTGGGAGCAGGCCAATCTGCGTTCACTATTCATTTTGAATGGGACGCAGACATGGGAATTCCTGGAGCATTTTTAATAAAAAATTATATGCAAGTTGAGCTCTTCCTAGTGAGTTTGACTCTTGAAGACATTCCTAATCAAGGAAGCATGCACTTTGTTTGCAACTCATGGGTTTACAATTCTAAAGTTTACGAAAAGGATCGGATTTTCTTTGCCAGTGAGACATATGTTCCAAGTGAAACACCTGGTCCATTAGTGACATATAGAGAAGCAGAATTGCAGGCTCTAAGAGGAAATGGAACAGGGAAGCGCAAGGAATGGGACAGAGTTTATGATTATGATGTTTACAATGATTTGGGCAATCCTGACAGTGGTGAAAACTTTGCTCGTCCAGTTCTTGGAGGATCTCTCACTCATCCCTACCCTCGTAGGGGAAGAACCGGTAGAAAACCAACAAAGAAAGATCCCAACAGTGAGAAACCTGGCGAGGCTTATATACCAAGAGATGAAAATTTCGGTCACTTGAAATCATCTGATTTCCTTACTTATGGGCTAAAATCTTTAACTCGAAGCTTCTTGCCTGCACTCAAAACTGTTTTTGATATAAATTTCACACCGAACGAGTTTGATAGCTTCGAAGAAGTGCGTGCACTCTGTGAAGGTGGAATTAAACTGCCTACAGATATACTTAGCAAAATTAGCCCCTTACCTGTGCTCAAGGAAATCTTCCGCACTGATGGTGAAAGTGTCCTAAAGTTTTCAGTACCTGATTTAATTAAAGTTAGTAAATCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAACCCTTGTGTGATTCGTCGTCTACAAGAGTTCCCACCACAAAGCAAGCTTGATCCCTCAGTCTATGGTGATCAAACAAGTAAAATGACTATAGATCACTTGGAGATTAACCTTGAAGGGCTCACAGTAGATAAGGCGATTAAGGATCAGCGATTATTCATATTAGATCACCATGACACATTTATGCCATTTTTGAGAAGGATAGATGAATCTAAATCATCAAAGGCTTATGCCACTAGAACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCATTGGCCATCGAATTAAGTTTGCCACATCCAGGTCAACAACAGCTTGGTGCCTATAGTAAAGTCATCTTGCCTGCAAACCAAGGTGTAGAAAGTACAATTTGGCTGTTGGCAAAGGCTCATGTTATTGTGAATGACTCGTGCTATCATCAACTCATAAGCCACTGGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAATCTCAGTATTCTTCACCCTATTTATAAACTTCTATTTCCTCACTATCGTGACACAATGAATATCAATGCACTTGCTCGACAATCACTTATTAATGCTGATGGCTTTATAGAGAAAACCTTTTTGGGTGGAAAGTATGCTGTGGAGATATCTTCGTCAGGTTACAAAAATTGGGTTTTCCTCGACCAAGCATTACCTGCTGATCTCATCAAGAGAGGAATGGCTATTGAGGATTCATCTTGTCCCAACGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGACATGGGTACAAGAGTATGTCTCCTTGTACTATGCAACAAATGATGCAATTAAAAAAGACCATGAACTCCAAGCATGGTGGAAAGAAGTTGTTGAGAAGGGACATGGTGACTTGAAAGACAAGCCTTGGTGGCCTAAAATGCAGACTCTTCAAGAGCTTATTCAATCATGTTCTACTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATACCCTTATGGTGGTTTTATCCTAAACCGTCCAACTCTTAGCAGGAGATGGATTCCAGAAGAAGGAACTCCAGAATATGACGAGATGACAAAGAATCCTCAAAAGGCTTATTTGAGAACAATCACGCCAAAGTTTCAGGCTCTTGTTGATCTTTCAGTGATAGAGATATTGTCAAGACATGCTTCTGATGAGGTCTACCTTGGACAGAGGGACAATCCAAATTGGACCTCTAATCCAAAGGCAATAGAAGCCTTTAAAAAGTTTGGAAAAAAGCTAGCAGAGATTGAGACAAAAATCTCAGAAAGAAACCATGATCCAAATCTTAGAAATCGAACCGGGCCGGCTCAATTGCCCTACACTGTGCTTCTTCCTACCAGTGAAACAGGGTTGACTTTTAGAGGAATTCCCAACAGCATCTCTATCTAA 2583 0.4096 MYSGVKGLFNRSQKVKGTVVLMRKNVLDINSITSVRGLIGTGINIIGSTIDGLTSFLGRSVCLQLISATKADGNGNGVVGKKTYLEGIITSIPTLGAGQSAFTIHFEWDADMGIPGAFLIKNYMQVELFLVSLTLEDIPNQGSMHFVCNSWVYNSKVYEKDRIFFASETYVPSETPGPLVTYREAELQALRGNGTGKRKEWDRVYDYDVYNDLGNPDSGENFARPVLGGSLTHPYPRRGRTGRKPTKKDPNSEKPGEAYIPRDENFGHLKSSDFLTYGLKSLTRSFLPALKTVFDINFTPNEFDSFEEVRALCEGGIKLPTDILSKISPLPVLKEIFRTDGESVLKFSVPDLIKVSKSAWMTDEEFAREMIAGVNPCVIRRLQEFPPQSKLDPSVYGDQTSKMTIDHLEINLEGLTVDKAIKDQRLFILDHHDTFMPFLRRIDESKSSKAYATRTILFLKDDGTLKPLAIELSLPHPGQQQLGAYSKVILPANQGVESTIWLLAKAHVIVNDSCYHQLISHWLNTHAVIEPFVIATNRNLSILHPIYKLLFPHYRDTMNINALARQSLINADGFIEKTFLGGKYAVEISSSGYKNWVFLDQALPADLIKRGMAIEDSSCPNGLRLVIEDYPYAVDGLEIWDAIKTWVQEYVSLYYATNDAIKKDHELQAWWKEVVEKGHGDLKDKPWWPKMQTLQELIQSCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRWIPEEGTPEYDEMTKNPQKAYLRTITPKFQALVDLSVIEILSRHASDEVYLGQRDNPNWTSNPKAIEAFKKFGKKLAEIETKISERNHDPNLRNRTGPAQLPYTVLLPTSETGLTFRGIPNSISI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1568 860 Gene3D PLAT/LH2 domain 4 170 - -
Gso8g1568 860 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Gso8g1568 860 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Gso8g1568 860 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Gso8g1568 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Gso8g1568 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 170 IPR036392 GO:0005515
Gso8g1568 860 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 7 860 - -
Gso8g1568 860 PANTHER LIPOXYGENASE 7 860 IPR000907 GO:0016702|GO:0046872
Gso8g1568 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Gso8g1568 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 860 IPR013819 GO:0016702|GO:0046872
Gso8g1568 860 SMART LH2_4 13 167 IPR001024 GO:0005515
Gso8g1568 860 Gene3D - 359 493 - -
Gso8g1568 860 MobiDBLite consensus disorder prediction 220 264 - -
Gso8g1568 860 Gene3D - 270 358 IPR027433 -
Gso8g1568 860 SUPERFAMILY Lipoxigenase 172 860 IPR036226 -
Gso8g1568 860 Pfam Lipoxygenase 179 843 IPR013819 GO:0016702|GO:0046872
Gso8g1568 860 CDD PLAT_LH2 14 167 IPR042057 -
Gso8g1568 860 Pfam PLAT/LH2 domain 73 165 IPR001024 GO:0005515
Gso8g1568 860 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 300 321 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 345 361 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 384 403 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Gso8g1568 860 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Gso8g1568 860 Gene3D - 171 269 - -
Gso8g1568 860 Gene3D - 494 859 - -
Gso8g1568 860 MobiDBLite consensus disorder prediction 245 264 - -
Gso8g1568 860 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1568 Gso-Chr8 15264948 15270531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1568 12 860 Acyl Lipid Metabolism Gene Families AT1G55020 58.237 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1568 K15718 - gmx:547694 1722.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1568 8 15264948 15270531 Gso15g0233 15 2131563 2135923 PCT
Gso8g1568 8 15264948 15270531 Gso11g3573 11 51445908 51452195 PCT