Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1571 ATGTTTCCAGTTGTGTCGGGTATCTTTAACAGGGGCCAGAAGCTAAAGGGGACAGTGGTGTTGATGCGTAAGAATGTGTTGGACATCAACGCCCTCACCTCTGCTCAAAGTGCCACTGGTATTATCGGCGGCGCCATCGGTGCCGTCGGTGATATCATTGGCACCGGAGTTGACACCCTCACCTCCTTTCTGGGCAGATCAGTGGCCCTCAAGTTGATCAGTGCCACCAGTGCTGATTCAACCGGAAAGGGAAAGGTTGGAAAGCAAACTTTTCTGGAAGGTCTTGTTGCTTCCTTACCAACCTTGCGAGCTGGAGAGTCTGCATTGGATATTCACTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCATTCTACATAGAGAATTTCATGCAAGTTGAATTCTTCCTTGTGAGTTTGACTCTTGAAGACGTTCCTAACCATGGAACCATCCACTTTGTTTGCAACTCATGGGTTTACAATGCAAAAATGTACAAAAACACTCGTATCTTTTTTACCAACAAGACATACCTTCCAAGTGAAACACCGGGTCCACTAGTGAAGTACAGAGAAGAAGAATTGAAGACTTTGAGAGGAGATGGAACAGGACAGCGCAAAGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGAACACCCGAAAAGGACAATTTGGCTCGCCCGGTTCTCGGGGGGTCCACCTTGCCTTACCCTCGCAGAGGAAGAACTGGTAGAAACAAATCTAAAAAAGATCCTAAAAGTGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGTCATTTGGTCACTTGAAGTCATCAGATTTCCTTGCTTATATACTCAAATCTGCATCTCAAAATGTGATACCTCAATTACAATCTGCACTTAGACTACAATTCAACCAGCCTGAGTTTACTAGCTTTGACGACGTGCGCGGACTCTATGATGGTGGGATTAAGTTGCCTACTGATGCACTTAGCAAGCTTAGTCCTATACCATTGTTCACTGAACTCTTCAGAACTGATGGGGAACAGGTCCTTAAGTTTCCCACACCTAAAGTAATTCAAGTGAATCTGTCTGGATGGATGACTGATGAAGAGTTTGCAAGAGAGATGATTGCTGGAGTAAATCCACACATTATTAAGAAACTTGAGGAGTTCCCACCAAAGAGCAAGCTAGATAGCCAACTTTACGGTGATAATACCAGCACAATAACCAAAGAAAACTTAGAGCCTAACTTGGGTGGACTCACTGTAGAACAGGCTATCCAAAACAACAAATTGTTCATACTAGACCATCATGACACACTAATTCCATATTTGAGGAGAATAAACGCAACTGAGACAAAGGCCTATGCTACTAGAACCATCCTTTTCTTGCAAGATAATGGAACTTTAAAGCCATTGGCCATTGAACTAAGTAAACCACATCCTCAGGGTGATAATTTTGGCCCTGTTAGTGATGTTTACCTTCCAGCAGAACAAGGTGTTGAAGCTTCTATTTGGCTACTTGCCAAGGCTTATGTGATCGTAAATGACTCTTGCTACCACCAGCTTGTCAGCCATTGGTTAAACACTCATGCAGTTGTTGAGCCATTCGTGATAGCAACAAACAGGCATCTTAGTGTTGTGCACCCTATTCACAAACTTCTTCTTCCACACTATCGCGACACAATGAACATCAATGCCCTTGCTAGGAATGTCCTGGTGAATGCTGAGGGTATTATAGAATCAACATTCTTCTGGGGAAAATATGCTTTGGAAATGTCTGCTGTTGTATACAAGGATTGGGTTTTCCCTGAGCAGGCACTACCTGCTGATCTTGTTAAGAGAGGTGTGGCTGTTGAGGATTCATCTTCTCCACATGGTCTTCGTCTTTTGATAGAGGACTATCCTTATGCTGCTGATGGATTAGAGATATGGGCTACTATCAAGTCATGGGTCCAAGAATATGTCTCTTTCTACTACAAGTCAGATGCTGCTATTGCACAAGATGCTGAACTCCAAGCCTTTTGGAAAGAACTAGTAGAGGTTGGCCACGGTGACAAGAAAAATGAGCCATGGTGGGGGAAGATGAAAACTCGCCAAGAGTTGATTGAATCTTGCACCACACTCATTTGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGTGGCTATATCCTTAACCGGCCAACTCTTAGCAGGCGATTCATGCCTGAGATAGGGTCCCCTGAGTATGATGAGCTTGCTAAGAACCCTCAGAAGGCATATTTGAAAACAATTACAGGGAAGAGTGATGCCCTTAAAGACCTTACAATTATAGAGGTCTTGTCAAGGCATGCTTCCGATGAGTTGTACCTTGGACAGAGAGATGGTGGTGAATTTTGGACTTTTGACAAAGAGCCATTAGAGGCCTTCAAGAGGTTTGGAAAGAAGTTGGCAGAAATTGAGCAAAAGCTCATCCAAAGGAACAATGATGAGACACTGAGGAACCGATACGGCCCAGTGCAGATGCCCTACACATTGCTTTATCCTTCTAGTGAAGAAGGGTTGACTTGCAGAGGCATTCCTAACAGCATCTCCATCTAA 2601 0.4383 MFPVVSGIFNRGQKLKGTVVLMRKNVLDINALTSAQSATGIIGGAIGAVGDIIGTGVDTLTSFLGRSVALKLISATSADSTGKGKVGKQTFLEGLVASLPTLRAGESALDIHFEWDSDMGIPGAFYIENFMQVEFFLVSLTLEDVPNHGTIHFVCNSWVYNAKMYKNTRIFFTNKTYLPSETPGPLVKYREEELKTLRGDGTGQRKEHERIYDYDVYNDLGTPEKDNLARPVLGGSTLPYPRRGRTGRNKSKKDPKSEIRSDSVYIPRDESFGHLKSSDFLAYILKSASQNVIPQLQSALRLQFNQPEFTSFDDVRGLYDGGIKLPTDALSKLSPIPLFTELFRTDGEQVLKFPTPKVIQVNLSGWMTDEEFAREMIAGVNPHIIKKLEEFPPKSKLDSQLYGDNTSTITKENLEPNLGGLTVEQAIQNNKLFILDHHDTLIPYLRRINATETKAYATRTILFLQDNGTLKPLAIELSKPHPQGDNFGPVSDVYLPAEQGVEASIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFFWGKYALEMSAVVYKDWVFPEQALPADLVKRGVAVEDSSSPHGLRLLIEDYPYAADGLEIWATIKSWVQEYVSFYYKSDAAIAQDAELQAFWKELVEVGHGDKKNEPWWGKMKTRQELIESCTTLIWTASALHAAVNFGQYPYGGYILNRPTLSRRFMPEIGSPEYDELAKNPQKAYLKTITGKSDALKDLTIIEVLSRHASDELYLGQRDGGEFWTFDKEPLEAFKRFGKKLAEIEQKLIQRNNDETLRNRYGPVQMPYTLLYPSSEEGLTCRGIPNSISI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1571 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 866 IPR013819 GO:0016702|GO:0046872
Gso8g1571 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Gso8g1571 866 Gene3D - 499 865 - -
Gso8g1571 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Gso8g1571 866 ProSiteProfiles PLAT domain profile. 47 173 IPR001024 GO:0005515
Gso8g1571 866 Gene3D - 178 275 - -
Gso8g1571 866 PANTHER LIPOXYGENASE 7 866 IPR000907 GO:0016702|GO:0046872
Gso8g1571 866 MobiDBLite consensus disorder prediction 223 262 - -
Gso8g1571 866 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Gso8g1571 866 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Gso8g1571 866 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Gso8g1571 866 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 866 - -
Gso8g1571 866 Gene3D PLAT/LH2 domain 4 177 - -
Gso8g1571 866 Pfam PLAT/LH2 domain 78 172 IPR001024 GO:0005515
Gso8g1571 866 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Gso8g1571 866 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Gso8g1571 866 SUPERFAMILY Lipoxigenase 178 866 IPR036226 -
Gso8g1571 866 SMART LH2_4 13 174 IPR001024 GO:0005515
Gso8g1571 866 Gene3D - 276 364 IPR027433 -
Gso8g1571 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Gso8g1571 866 Pfam Lipoxygenase 186 849 IPR013819 GO:0016702|GO:0046872
Gso8g1571 866 Gene3D - 365 498 - -
Gso8g1571 866 CDD PLAT_LH2 14 174 IPR042057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1571 Gso-Chr8 15326626 15331261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1571 13 866 Acyl Lipid Metabolism Gene Families AT1G55020 58.065 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1571 K15718 - gmx:100127400 1729.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0057 7 504723 515607 Gso8g1571 8 15326626 15331261 GST
Gso15g0233 15 2131563 2135923 Gso8g1571 8 15326626 15331261 PCT
Gso11g3573 11 51445908 51452195 Gso8g1571 8 15326626 15331261 PCT
Gso8g1571 8 15326626 15331261 Gso11g3574 11 51469699 51475203 PCT