Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1176 ATGGTATTGCAGAAAAGGTTAGAGTACGGATTTAATGGCTATCAGGCTCCGGCCATGCCGCGAGCTTCCCGATCAACTAGGAGGAGGGCTAAATTTCGAAGAGCAGAAGACAATCAAAAGTGTGCATTTGACTTATTGGCCACCGTAGCTGGTAAACTATTGCAAGAGAGAGAGAATCCAACCATGTCTAGTGATACATCATTAGAAAAGGATCAGTGTGGATTTGTCAAAGAGTGCCAAGATGCAAATAAACCATCCAAATCTGAGATTTCTGATGAAGGAAGTTGTGACAACAGTGGTTTCTCTCGTCTTTCTTCACAAACAAACAAAAAAAATTGCGGTTTGAAAGAATTCACACATCTTGCAATTGATGGTGATGTAGGGATTGCTTCTATAGTGACAAGTTCTAGTTGCTTAGAGAGGTTCATTGCAGAGAAAATGGTGGATAGCAATAGCCATTTCAAAGTGGAAAATGTTACTAGCAAAGTTAATTTAGATTTTTCTGATTATCCAAAGGATAGTGATTTCAAGTTAGATGGCGATACCAGTAAAGGAAAGGATGAGTTGCATAAATTTGAGAAGGTGCCAATTGGTAGTGGGATTGACATGTGTAATTTTGAGGACCCTTTGGATGTAAATCCTCCTGCATTGATCAGTTTAGGTGGCAATGCCAAATTGTCTGGGTATAATGATAGGATTCCCTGTAGCTTGTTGTCCAAAAGTCGTGACAATGTACCAGTAGTTAGTAGAGATGATGATGAAAACTCTTCTGGGTGTACTCACCCTATAAATACTGAAACCAAGTCCTTTAGGCCAAAGACTTGTATAGGTAAAAGAATGGCTTCTAACTTTCAGAAAGTTGCTGAAAAAACAAAGAATTATGCACTTTCTAACAATGATGGAGATTGGAAGCGAACTTACCTCAGCAAGAGGAACTGCAATAAACACCAAAGTTCTCAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAATTATCGCTCTGTTGCAAACTCTAATGGATTGATCAGGAGAGGTGGCATTTATTATTCACCTGAGAATTGTATGAATCAGGATGGATGTGATTCACCACCTGGGATGCACAAAGACCCTGGAATGTCATCTTTGGAAGCATGCCAACATCAGACGTTACGAAGCATAGGTTCTCATGTGAATCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAACAAGTTAAGGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATCATAACGAGTTGGATGCTTTGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTACCGATTGTATGTGCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGACATTTTGAAAGTGACCATGATTCAGCACCTTCTCCTGTCAATGTGTCTGTTGACAAAAATATGAAAGATTCCAAAGAACTGGTTACTGTTCCTGAAATGGATGAGGAACTAGCTATGGTACCTGTACACCAGAAGCCAAAGCGATCTGAGATCGTCCAGCGTCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAACTAGGAACTGGAAGGTGGCGTGATGTTAAGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACGCATATTGGTCCCAGCAACAGACTAAGTCACAGCACAAGCACCATCCAGAAACTGAAACTGTCTTCTCCTTTTAA 2055 0.4117 MVLQKRLEYGFNGYQAPAMPRASRSTRRRAKFRRAEDNQKCAFDLLATVAGKLLQERENPTMSSDTSLEKDQCGFVKECQDANKPSKSEISDEGSCDNSGFSRLSSQTNKKNCGLKEFTHLAIDGDVGIASIVTSSSCLERFIAEKMVDSNSHFKVENVTSKVNLDFSDYPKDSDFKLDGDTSKGKDELHKFEKVPIGSGIDMCNFEDPLDVNPPALISLGGNAKLSGYNDRIPCSLLSKSRDNVPVVSRDDDENSSGCTHPINTETKSFRPKTCIGKRMASNFQKVAEKTKNYALSNNDGDWKRTYLSKRNCNKHQSSQMNIPFKKRKLFNYRSVANSNGLIRRGGIYYSPENCMNQDGCDSPPGMHKDPGMSSLEACQHQTLRSIGSHVNLRIKSFRVPELFIEVPETATIGSLKRTVMDAVTAVLGGELHIGVFLQGKQVKDDSKTLLQTGISHHNELDALGFTLEPNSSQSLPIVCASHSPRPKADITEPVIRYPSSPAVIHQRIQGNSDMLPEHQVTSLGRHFESDHDSAPSPVNVSVDKNMKDSKELVTVPEMDEELAMVPVHQKPKRSEIVQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFDNANHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLVAHAYWSQQQTKSQHKHHPETETVFSF* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1176 684 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 679 IPR031105 -
Gso11g1176 684 Gene3D - 572 675 - -
Gso11g1176 684 CDD SANT_TRF 584 634 - -
Gso11g1176 684 SMART sant 582 635 IPR001005 -
Gso11g1176 684 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 1 679 - -
Gso11g1176 684 SUPERFAMILY Ubiquitin-like 389 474 IPR029071 -
Gso11g1176 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 579 637 IPR017930 -
Gso11g1176 684 SUPERFAMILY Homeodomain-like 584 665 IPR009057 -
Gso11g1176 684 ProSiteProfiles Myb-like domain profile. 578 633 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1176 Gso-Chr11 10563573 10568862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1176 - - gmx:100797436 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1176 11 10563573 10568862 Gso11g1176 11 10563573 10568862 ECH
Gso11g1176 11 10563573 10568862 Gso18g0330 18 3103325 3108604 ECH
Gso12g0514 12 4589421 4594743 Gso11g1176 11 10563573 10568862 GST
Gso15g0329 15 2964397 2970406 Gso11g1176 11 10563573 10568862 PCT
Gso11g3480 11 50686100 50692894 Gso11g1176 11 10563573 10568862 PCT
Gso11g1176 11 10563573 10568862 Gso15g0329 15 2964397 2970406 PCT
Gso11g1176 11 10563573 10568862 Gso11g3480 11 50686100 50692894 PCT