Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3480 ATGGTGTTGCAGAAGAGGTTAGACTATAGCTTTTATGGCTATCAGGTGCCAACCAAGCGCCGAGCTACCCGATTAGCTAAGAGGAGGGTTACATTTCAAAGAAGGTTGGAAGACAATCAGATGTGTGCATTTGACTTATTGGCCACTGTAGCTGACAATTTGTTGCAAGAGAAACAGAATCCAACCACATCCAGTGATAGATCATCGGAAAAGGATGGGGATGGATTTCCTAAAGAGGAACGCCAGGATGCAAATAAACCATTCAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAAATGTCAGCTTGAATTTGTTAAAGAAGGAAGCTCAAATGCAAATAAACCATTCAAAGTTGAGCTTTCGGATGAAGGAATTAGTGACAGAAAATGTTTCTCTAATATTTCTTCACAAGTCTACAATCAAAATTGTTGTTCGAAGGAACTCCCCGAACATGAAATTGATGGTCATTTATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAAGATTGTTGCTGAGACACTGGTGGATGGAAAAGGCCACAATGGGATGGAAAAATTAGCTAGCAAAGTTGAATTAGGTTCCTGTGGATATCTAGAGAGTAGGGGTTGCAAGTTAGATGGTGATGTTAGTAAAGTAAAAGACGATAAGTTTGGGAAGGTTCCCATTGATACTGGGACTGGGTTGTGCTGTTTTGAGGATACCTTGGATGAAAAACCTCTAGCACTGATCAGTTCATGTGGCAATGCCAAGATGTCCGGGTATGATGACAGCATGCCTCAGAGCTCATGGTCCAAAGGTTGTGACAATGTACTGGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCCAGTACCAAAATAAAGTCCTTTAGGCCAATTACTTGTATAGATGATAGAAAAACAAAGAAAAGATTGGCTTCTAAACATCATAAAGTTTCTCAAGAATCCAAGCATGATATACTATCTAACAGTGTTTTGGATGGAAATTTGAAGTCAGTTTACAGCAGTAGGAAGAACTATTATAAAAGCCAAAGATCTCAAATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAACTGCAGCTCTGATACAAATTCTAACGGATATATCAGAAGTGATGACACTTGTTATTCACCCAAGAATGACACGAACCAAAGTGTTTCTTGTTCATCTTCTGGAATGAGCCAAGATCATGGAACATCATCCTTGGGACACTCTGCATTACGATCTAGAGATTCTTACGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTTATCGAGATTCCAGAAACTGCAACCGTTGGGTCCTTGAAGAGGACAGTGATGGAGGCAGTGACTGCTGTACTTGGAGGCGGATTGCGTGTGGGTGTGATTCTCCATGGAAAGAAGGTTAGAGATGACAGTAAAACTCTACTTCAGACTGGAATTTCTCATGATAACCACCTGGATGCTTTGGGCTTCGCCTTGGAGCCTAATTGTTCACGAAACCGACCATCTGCATGTGCTACAACAGATTCTCTCCACATTCCTAGTGCAGATATGCCTCAGCCTTTAATAGGGTACCCTTCAAGTCCTGCTGTAATTCATCAGAGGATTCAGGGCTTTTCTAACATGTTAGCCAAGCATCAAGCAACCAGTTCAGGTAACCTTGTTGAAAGTGATCATGATTCAGCACCTTCTCCTATCAACACATCCGGTGAAAAATATTTGTCAGATTCAAAAGAACTAATTACTGTTCCTGAAATGGGTATGGAGGCACTAGCTGTGCTACCTGTGCATCAGAAGTCAAAACGAACTGAGATCGCACAGCGCCGAATTCGTAGGCCTTTTTCTGTTACTGAAGTGGAAGCACTGGTTCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGCGATGTTAAACTTCGTGCATTTGACAATGCAAAGCATCGGACATACGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACAGCAAGAATATCAGCTCAGCAAAGGAGGGGAGAGCCTGTTCCCCAAGAACTTTTGGACAGGGTCCTAACTGCTCACGCATATTGGTCCCAGCAACAGACTAAGCAACAGCTCAAGCACCACTCAACAAAACCTTGCCTTCTCCTTTATACTATGTCACACTTTATCTATCATGTTAAAATTAGAACAAGGTGA 2205 0.4163 MVLQKRLDYSFYGYQVPTKRRATRLAKRRVTFQRRLEDNQMCAFDLLATVADNLLQEKQNPTTSSDRSSEKDGDGFPKEERQDANKPFKTELSDEASCDRKCQLEFVKEGSSNANKPFKVELSDEGISDRKCFSNISSQVYNQNCCSKELPEHEIDGHLCIASIVTSSSCSEKIVAETLVDGKGHNGMEKLASKVELGSCGYLESRGCKLDGDVSKVKDDKFGKVPIDTGTGLCCFEDTLDEKPLALISSCGNAKMSGYDDSMPQSSWSKGCDNVLVDSRDDDENFSGCAHPSTKIKSFRPITCIDDRKTKKRLASKHHKVSQESKHDILSNSVLDGNLKSVYSSRKNYYKSQRSQMNIPFKKRKLFNCSSDTNSNGYIRSDDTCYSPKNDTNQSVSCSSSGMSQDHGTSSLGHSALRSRDSYVKLRIKSFRVPELFIEIPETATVGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDSKTLLQTGISHDNHLDALGFALEPNCSRNRPSACATTDSLHIPSADMPQPLIGYPSSPAVIHQRIQGFSNMLAKHQATSSGNLVESDHDSAPSPINTSGEKYLSDSKELITVPEMGMEALAVLPVHQKSKRTEIAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISAQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHSTKPCLLLYTMSHFIYHVKIRTR* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3480 734 CDD SANT_TRF 620 670 - -
Gso11g3480 734 MobiDBLite consensus disorder prediction 64 92 - -
Gso11g3480 734 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 718 IPR031105 -
Gso11g3480 734 SMART sant 618 671 IPR001005 -
Gso11g3480 734 SUPERFAMILY Ubiquitin-like 419 508 IPR029071 -
Gso11g3480 734 MobiDBLite consensus disorder prediction 390 414 - -
Gso11g3480 734 PANTHER TELOMERE REPEAT-BINDING PROTEIN 2-RELATED 1 718 - -
Gso11g3480 734 MobiDBLite consensus disorder prediction 57 92 - -
Gso11g3480 734 ProSiteProfiles Ubiquitin domain profile. 424 494 IPR000626 GO:0005515
Gso11g3480 734 ProSiteProfiles Myb-like domain profile. 614 669 IPR001005 -
Gso11g3480 734 SUPERFAMILY Homeodomain-like 620 701 IPR009057 -
Gso11g3480 734 Gene3D - 607 711 - -
Gso11g3480 734 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 614 673 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3480 Gso-Chr11 50686100 50692894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3480 - - gsj:114374220 1455.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0329 15 2964397 2970406 Gso11g3480 11 50686100 50692894 GST
Gso11g3480 11 50686100 50692894 Gso12g0514 12 4589421 4594743 PCT
Gso11g3480 11 50686100 50692894 Gso11g1176 11 10563573 10568862 PCT
Gso12g0514 12 4589421 4594743 Gso11g3480 11 50686100 50692894 PCT
Gso11g1176 11 10563573 10568862 Gso11g3480 11 50686100 50692894 PCT