Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0514 ATGTCTAGTGATACATCATCAGAAAAGGATCAGTCTGGATTTGTCAAAGAGTGCCAAGATGCAAATAAACCATCCAAATCTGTGATTTCTGATGAAGGAAGTTGTGACAAAAGTGGTTTCTCTCGTCTTTCTTCACAAACAAACAACAAAAATTGTGGTTTGAAAGAATTCCCACATCTTGCAATTGATGGTGATGCAGGGACTGCTTCTATAGTAACAAGTTCTACTTGCTTAGAAGGGTTCATTGCAGAGAAATTGGTGGATGGAAATAGCCATTTCAAAGTGGAAAACGTTACTAGCACAGTTAATTTAGATTCTTCTGATTATCCAAAGCATAGTAATTTCAAGTTACACGGTGATACAAGTAAAGGAAAGGATGAGTTGCATAAGTTTGAGAAGGTGCCAATTGGTAGTGGGATTGACATGTGTAGTTTTGAGGACCCTTTGGATGATAATCCTCCTGCGTTGATCAGTTTAGGTGGCAATGCCAAATTGTCTGGGTATAATGATAGGATTCCCTGTAGCTTGTTGTCCAAAAGTCGTGACAATGTACCAGTAGTTAGTAGAGATGATGATGAAAACTCTTATGGGTGTACTCACCCTATTAATACTAAAACCAAGTCCTTTAGGCTAAAGACTGGTATAGGTGATAATAGAATAAGTAAAAGACTGGCTTCTAACTTTCAGAAAGTTGCTGAAAAAACAAAGGATCATACACATTCTAACAATGATGGAGATTGGAAGCGAACTTACTGCAGCAAGAGGAACTGCAATAAACACCAAAGTTCTCAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAATTATCGCTCTGTTTCAAATTCTAATGAATTGATCAGGAGTGGTGGTATTTATTATTCACCTGAGAATTGTATGAATCAGGACGGTTGTGGTTCACCACCTGGGATGCACAAAGACCCTGGAATGCCATCTTTGGAAGCATGTCAACATCAGACGTTACGAAGTAGAGGTTCTCATGTGAATCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGAGGACAGTGATGGATGCAGTGACTGCTGTGCTTGGAGGTGAATTGCACATTGGTGTTTTTCTCCAGGGAAAAAAAGTTAAGGATGACAGTAAAACTCTACTTCAAACCGGAATTTCTCATCAAAACGAGCTGGATGCTTTGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTACCGATTGTATGTGCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGCCATTTTGAAAACGACCATGATTCAGCACCTTCTCCTGTTAATGCATCTGTTGAGAAAGGTATGAAAGATTCCAAAGAACTGGTTACTGTTCCTGAAATGGATGAGGAACTAGCTATGGTACCTGTACACCAGAAGTCAAAGCGATCTGAGATTGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGGTGGCGAGATGTTAAGGTTTGTGCTTTTGATAATGCAAAGCATCGGACATATGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAACAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCCACGCTTATTGGTCCCATCAGCAGACTAAGCCGCAGCACAAGCACCATCCAGAAACTGAAACTGTCTTCTCCTTTTAA 1875 0.4085 MSSDTSSEKDQSGFVKECQDANKPSKSVISDEGSCDKSGFSRLSSQTNNKNCGLKEFPHLAIDGDAGTASIVTSSTCLEGFIAEKLVDGNSHFKVENVTSTVNLDSSDYPKHSNFKLHGDTSKGKDELHKFEKVPIGSGIDMCSFEDPLDDNPPALISLGGNAKLSGYNDRIPCSLLSKSRDNVPVVSRDDDENSYGCTHPINTKTKSFRLKTGIGDNRISKRLASNFQKVAEKTKDHTHSNNDGDWKRTYCSKRNCNKHQSSQMNIPFKKRKLFNYRSVSNSNELIRSGGIYYSPENCMNQDGCGSPPGMHKDPGMPSLEACQHQTLRSRGSHVNLRIKSFRVPELFIEVPETATIGSLKRTVMDAVTAVLGGELHIGVFLQGKKVKDDSKTLLQTGISHQNELDALGFTLEPNSSQSLPIVCAAHSPGPKADITQPVISPAVIHQRIQGNSDMLPEHQVTSLGSHFENDHDSAPSPVNASVEKGMKDSKELVTVPEMDEELAMVPVHQKSKRSEIVQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKVCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLVAHAYWSHQQTKPQHKHHPETETVFSF* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0514 624 CDD SANT_TRF 524 574 - -
Gso12g0514 624 PANTHER TELOMERIC REPEAT BINDING PROTEIN 5 619 IPR031105 -
Gso12g0514 624 MobiDBLite consensus disorder prediction 1 36 - -
Gso12g0514 624 Gene3D - 511 615 - -
Gso12g0514 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 519 577 IPR017930 -
Gso12g0514 624 SUPERFAMILY Ubiquitin-like 330 418 IPR029071 -
Gso12g0514 624 ProSiteProfiles Myb-like domain profile. 518 573 IPR001005 -
Gso12g0514 624 SUPERFAMILY Homeodomain-like 524 604 IPR009057 -
Gso12g0514 624 MobiDBLite consensus disorder prediction 465 486 - -
Gso12g0514 624 ProSiteProfiles Ubiquitin domain profile. 335 405 IPR000626 GO:0005515
Gso12g0514 624 SMART sant 522 575 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0514 Gso-Chr12 4589421 4594743 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0514 - - gmx:100816121 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0514 12 4589421 4594743 Gso11g1176 11 10563573 10568862 GST
Gso15g0329 15 2964397 2970406 Gso12g0514 12 4589421 4594743 PCT
Gso11g3480 11 50686100 50692894 Gso12g0514 12 4589421 4594743 PCT
Gso12g0514 12 4589421 4594743 Gso15g0329 15 2964397 2970406 PCT
Gso12g0514 12 4589421 4594743 Gso11g3480 11 50686100 50692894 PCT