Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0336 ATGTACAGAGAGCGAGGAGGCGTCGGATCCAAATCGGAGGTAACTTCCGTTGATCGGAAGCGAATCAATGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCCGGCGCCATCAACGGCAAGGACCGCTCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAGGAATCTGAAACAGACAGCGAGGAGTCTGATGTTAGTGGCTCCGACGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAATTCTTCTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCTCATGGTGACATGTTTACCGAGGAACAGAATGAGTTAATTGAATCAGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTCGACAAGTACAAGAACTATGATTTTGGCAGATGCCCACGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCTAGTACTGTGAAAATATACTGCCCTCGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACGTTTCCTCATCTGTTCTTGATGACTTATGGACAACTAAAGCCACAGAAACCATCACAGAGCTATGTCCCGAGAGTTTTTGGCTTCAAACTTCACAAGCCCTGA 861 0.4866 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0336 286 SUPERFAMILY Casein kinase II beta subunit 97 285 IPR035991 GO:0005956|GO:0019887
Gso11g0336 286 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956|GO:0019887
Gso11g0336 286 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 285 - -
Gso11g0336 286 MobiDBLite consensus disorder prediction 1 95 - -
Gso11g0336 286 ProSitePatterns Casein kinase II regulatory subunit signature. 200 231 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 218 239 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PRINTS Casein kinase II regulatory subunit family signature 246 263 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 Gene3D - 197 271 - -
Gso11g0336 286 MobiDBLite consensus disorder prediction 29 76 - -
Gso11g0336 286 SMART CK_II_beta_2 99 282 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 MobiDBLite consensus disorder prediction 14 28 - -
Gso11g0336 286 Pfam Casein kinase II regulatory subunit 99 282 IPR000704 GO:0005956|GO:0019887
Gso11g0336 286 PANTHER CASEIN KINASE II SUBUNIT BETA 1 285 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0336 Gso-Chr11 2818028 2821367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0336 K03115 - gmx:100780095 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1738 1 54203014 54206554 Gso11g0336 11 2818028 2821367 GST
Gso11g0336 11 2818028 2821367 Gso5g0577 5 6777857 6780720 PCT
Gso11g0336 11 2818028 2821367 Gso17g1261 17 12375759 12378803 PCT
Gso5g0575 5 6741490 6744843 Gso11g0336 11 2818028 2821367 PCT
Gso17g1259 17 12355975 12360481 Gso11g0336 11 2818028 2821367 PCT