Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1259 ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGTGTTGTTGTTCGGAAGCGATTCAAGGAGAAGCAGCAACAACAACAACAACAACCCTTTCCTTCCACAAGGGCCATCATCAACCAACAACACCGTCGCTGTGCCTCCCTCCCCAACAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTGTCTGATGTTAGCGTTTCAGAAGGGGATGACACATCTTGGATTTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTGGATGATGATTTCGTGCAAGATGATTTCAACCTTTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCCTCCCACGGAGACACGTTCACAGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGGTACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTATGACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCAGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATTTACTACCCAAAGTCCAAGTATCAAGGTAACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTTTTTCTGATGACTTATGGGAATCTGAAGCCACAGAAGCAATCACAGAACTATGTACCTAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA 789 0.4221 MNDYKGREGESSVVVRKRFKEKQQQQQQQPFPSTRAIINQQHRRCASLPNNTQYEESETDVEVSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEDQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYDFGRCPRVFCSGQPCLPVGQSDVPRSSTVKIYCPRCEDIYYPKSKYQGNIDGAYFGATFPHLFLMTYGNLKPQKQSQNYVPRVFGFKVHKS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1259 262 ProSitePatterns Casein kinase II regulatory subunit signature. 176 207 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 75 91 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 92 106 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 147 168 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 172 193 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 PRINTS Casein kinase II regulatory subunit family signature 222 239 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 SMART CK_II_beta_2 75 258 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 Pfam Casein kinase II regulatory subunit 75 258 IPR000704 GO:0005956|GO:0019887
Gso17g1259 262 Gene3D - 173 247 - -
Gso17g1259 262 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 68 172 IPR016149 GO:0005956|GO:0019887
Gso17g1259 262 PANTHER CASEIN KINASE II SUBUNIT BETA-2 11 261 - -
Gso17g1259 262 SUPERFAMILY Casein kinase II beta subunit 73 261 IPR035991 GO:0005956|GO:0019887
Gso17g1259 262 PANTHER CASEIN KINASE II SUBUNIT BETA 11 261 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1259 Gso-Chr17 12355975 12360481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1259 K03115 - gmx:100784315 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0575 5 6741490 6744843 Gso17g1259 17 12355975 12360481 GST
Gso17g1259 17 12355975 12360481 Gso1g1738 1 54203014 54206554 PCT
Gso17g1259 17 12355975 12360481 Gso11g0336 11 2818028 2821367 PCT