Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0575 ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGGTAACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTTTTTCTGATGACTTATGGGAATCTGAAGCCACAGAAGCAATCACAGAACTATGTACCTAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA 774 0.4225 MNDYKGREGESSVVVVRKRFKEKQQPCPSTRPIINQQHRRSASLPNTQYEESETDVEVSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEDQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYNFGRCPRVFCSGQPCLPVGQSDVPRSSTVKIYCPRCEDMYHPKSKYQGNIDGAYFGATFPHLFLMTYGNLKPQKQSQNYVPRVFGFKVHKS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0575 257 ProSitePatterns Casein kinase II regulatory subunit signature. 171 202 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 Gene3D - 168 242 - -
Gso5g0575 257 SUPERFAMILY Casein kinase II beta subunit 68 256 IPR035991 GO:0005956|GO:0019887
Gso5g0575 257 PANTHER CASEIN KINASE II SUBUNIT BETA-2 10 256 - -
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 70 86 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 87 101 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 142 163 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 167 188 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 189 210 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PRINTS Casein kinase II regulatory subunit family signature 217 234 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 Pfam Casein kinase II regulatory subunit 70 253 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 MobiDBLite consensus disorder prediction 19 55 - -
Gso5g0575 257 SMART CK_II_beta_2 70 253 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 PANTHER CASEIN KINASE II SUBUNIT BETA 10 256 IPR000704 GO:0005956|GO:0019887
Gso5g0575 257 MobiDBLite consensus disorder prediction 28 52 - -
Gso5g0575 257 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 63 167 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0575 Gso-Chr5 6741490 6744843 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0575 K03115 - gmx:100789357 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0575 5 6741490 6744843 Gso17g1259 17 12355975 12360481 GST
Gso5g0575 5 6741490 6744843 Gso1g1738 1 54203014 54206554 PCT
Gso5g0575 5 6741490 6744843 Gso11g0336 11 2818028 2821367 PCT