Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0577 ATGTACAAAGAACGAGAGCGAGTTGGTGTTTCTGTTTCCGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGATAAGCACTTGGAACGATCCTCTCCTTCCACTTCTCGCCCCATCACCTCCGCCTCCAAGAATTCCAACCTCCAAGTGGAGGAATCTGAAACGGAGAGTGAAGAGTCTGATGTTAGTGGCTCTGATGGGGATGACACCTCTTGGATCTCGTGGTTCTGTAATCTCAGAGGGAATGAGTTCTTTTGTGAGGTGGATGATGATTACATACAGGATGACTTTAACCTATGTGGGTTGAGCAGTCAAGTGCCCTACTATGATTATGCCCTTGATTTGATTCTCGACGTCGAGTCGTCCCATGGTGACATGTTCACGGAGGAACAGAATGAGTTGATTGAATCAGCGGCGGAAATGCTTTATGGTCTGATTCATGCCAGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCAGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCACGTTCCAAGTATCAAGGCAACATTGATGGGGCTTACTTTGGAACTACATTTCCACACCTCTTCTTGATGACTTATGGACAACTGAAGCCACAGAAACCAGCACAAGGCTATGTTCCAAGAGTTTTTGGGTTCAAAGTTCACAAGCCATAA 786 0.458 MYKERERVGVSVSASKSEDRKRINDVLDKHLERSSPSTSRPITSASKNSNLQVEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKVHKP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0577 261 Pfam Casein kinase II regulatory subunit 74 257 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 MobiDBLite consensus disorder prediction 1 35 - -
Gso5g0577 261 Gene3D - 172 246 - -
Gso5g0577 261 MobiDBLite consensus disorder prediction 36 53 - -
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 74 90 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 91 105 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 146 167 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PRINTS Casein kinase II regulatory subunit family signature 221 238 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 MobiDBLite consensus disorder prediction 1 70 - -
Gso5g0577 261 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 67 171 IPR016149 GO:0005956|GO:0019887
Gso5g0577 261 ProSitePatterns Casein kinase II regulatory subunit signature. 175 206 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PANTHER CASEIN KINASE II SUBUNIT BETA 51 260 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PANTHER CASEIN KINASE II SUBUNIT BETA 16 44 IPR000704 GO:0005956|GO:0019887
Gso5g0577 261 PANTHER CASEIN KINASE II SUBUNIT BETA 51 260 - -
Gso5g0577 261 PANTHER CASEIN KINASE II SUBUNIT BETA 16 44 - -
Gso5g0577 261 SUPERFAMILY Casein kinase II beta subunit 72 260 IPR035991 GO:0005956|GO:0019887
Gso5g0577 261 SMART CK_II_beta_2 74 257 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0577 Gso-Chr5 6777857 6780720 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0577 K03115 - gmx:100793573 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0577 5 6777857 6780720 Gso17g1261 17 12375759 12378803 GST
Gso1g1738 1 54203014 54206554 Gso5g0577 5 6777857 6780720 PCT
Gso11g0336 11 2818028 2821367 Gso5g0577 5 6777857 6780720 PCT