Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00259 atgccgagctcgaactcggcatctcagcgcaaagtgacctcggacacgcgctatatgatgtaccacccccatcttggagcaaccaacgtaccagcgaaggaggctcgccgatcttacccagcggatcatctctacgacagatctccgTGCGAGTCACGCATAGGTGGGTGGTCTTCCTGTTCTGCTTCACAGAGGAATAGGTGTTCTGCTCCTTCCAAGGTGGTGTGTTGTGCTCCAACCAGTGGCGTTTTGATGGAGAAAGAGATAAACGGTGGTTCCACGGTGGCTGACGTCGATGACAACGCCACCTCCTGCGGCGGCGGCGTTCGCGACGTGTACGGCGAGGATAAGGCCTCGGAGGATCGGCTTGTCACTCCATGGAGTGTCTCTGTTGCTAGTGGGTATACTTTGTTGAGAGATCCACGCTTTAACAAAGGGTTGGCCTTCACTGAAAAAGAGAGGGATGCTCATTACTTGTCTGGCCTTCTTCCTCCAATAGTTATTTCTCAAGAAACTCAGGTGAAGAAACTGATCCAACATATACGCCAGTATGAAGTTCCATTGCACAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTTTACAAGCTTCTACTTGATCATGTTGAGGAGTTACTTCCTGTTGTGTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTCATGCATCCTCAGGGTCTTTATATAAGTTTGAAGGAAAAAGGGAGGATTCTTGAAGTGCTGGGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGCGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGggaatgggaataccagtaggaaaactttctttatatacagcacttggtggagttcggccttcttctTGCTTGCCTATTACCATCGATGTGGGTACAAACAATGAGAAGTTGTTGAATGATGAATTGTATATAGGGCTCAAGCATAGACGAGTAACTGGTCAGGAATATGCTGAACTTCTGAATGAATTTATGACTGCAGTCAAGCAAAATTATGGTGAAAAAATCCTCGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCAACACACCTTGTCTTTAATGATGATATTCAGggaacagcatcagtggtccttgcaggactaattgcagctctaaaattggttggcggaaacttgactgatcacaggttcttattcctaggtgctggagagGCTGGCACAGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACGGACAAATACCCCATTGGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTGAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCTTGGGCTCATGAACATGAACCTGTTACGGAACTTGTAGATGCTATTAATCAAATTAAGCCAACAGTGTTAATTGGAACATCAGGGCAAGGGAGAACTTTTACTAAAGATGTCGTTGAAGCCATGGCTTCCAATAATGAGAAACCTATTATTCTTGCTCTTTCCAACCCAACATCACAGTCTGAATGCACTGCGGAGGAAGCATATACTTGGAGCGAGGGGCGTGCCATTTTTGCTAGTGGGAGTCCATTTGCCCCAGTTGAATTTGATGGAAAAGTGTTTGTGCCTGGCCAGGCTAACAATGCATACATTTTCCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGAGTGCATGATGATCTGCTTCTGGCAGCTTCTGAGGCATTGGCTTCACAGGTGAGCCAGGAGGACTATGACAAAGGGCTCATATACCCTCCATTTACTAACATCAGAAAGATTTCAGCACACATAGCTGCCAATGTGGCTGCTAAGTCCTATGAGCTTGGTTTGGCCACTCGCCTTCCTCAACCAAAAGATTTGGTCAAGTTTGCTGAGGGCTCTATGTATACTCCTGCCTATAGATGCTACCGGTGA 2022 0.3764 MPSSNSASQRKVTSDTRYMMYHPHLGATNVPAKEARRSYPADHLYDRSPCESRIGGWSSCSASQRNRCSAPSKVVCCAPTSGVLMEKEINGGSTVADVDDNATSCGGGVRDVYGEDKASEDRLVTPWSVSVASGYTLLRDPRFNKGLAFTEKERDAHYLSGLLPPIVISQETQVKKLIQHIRQYEVPLHKYMAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLGNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHRRVTGQEYAELLNEFMTAVKQNYGEKILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLIAALKLVGGNLTDHRFLFLGAGEAGTGIAELIALETSKRTNTPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVTELVDAINQIKPTVLIGTSGQGRTFTKDVVEAMASNNEKPIILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFAPVEFDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQEDYDKGLIYPPFTNIRKISAHIAANVAAKSYELGLATRLPQPKDLVKFAEGSMYTPAYRCYR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00259 673 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 389 672 IPR036291 -
Cca11g00259 673 CDD NAD_bind_1_malic_enz 389 667 - -
Cca11g00259 673 SMART Malic_M_2 389 642 IPR012302 GO:0051287
Cca11g00259 673 Gene3D - 132 386 IPR037062 GO:0004471
Cca11g00259 673 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 120 388 IPR046346 -
Cca11g00259 673 SMART malic_2 198 379 IPR012301 GO:0004471
Cca11g00259 673 Pfam Malic enzyme, N-terminal domain 198 379 IPR012301 GO:0004471
Cca11g00259 673 Pfam Malic enzyme, NAD binding domain 389 640 IPR012302 GO:0051287
Cca11g00259 673 PIRSF ME 100 673 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 ProSitePatterns Malic enzymes signature. 385 401 IPR015884 GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 264 293 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 300 322 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 204 228 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 416 432 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 360 378 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 385 401 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PRINTS Malic enzyme signature 519 535 IPR001891 GO:0004470|GO:0004471
Cca11g00259 673 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 101 673 - -
Cca11g00259 673 PANTHER MALIC ENZYME-RELATED 101 673 - -
Cca11g00259 673 Gene3D - 387 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00259 Cca-Chr11 3158304 3164839 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00259 K00029 - gmx:100785718 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00259 11 3158304 3164839 Cca10g00215 10 2265859 2271891 ECH
Cca09g02628 09 51908673 51914305 Cca11g00259 11 3158304 3164839 ECH
Cca08g00092 08 1196205 1202196 Cca11g00259 11 3158304 3164839 ECH
Cca11g00259 11 3158304 3164839 Cca11g00259 11 3158304 3164839 ECH
Cca11g00259 11 3158304 3164839 Cca03g01385 03 32072788 32078524 ECH
Cca10g00215 10 2265859 2271891 Cca11g00259 11 3158304 3164839 PCT