Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00092 atggagagcacacttaaggccctcagagatggtgagtcagtgcttgatctgagtccaagatccaccgtgagtggtggcgttgaggatgtctacggtgaggatcatgccactgaggaccaacttgttacaccatggaacTTCTCAGTTGCTAGTGGGTACTCTTTGCTTAGAGATCCACAATACAACAAGGGACTTGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGACTTTTACCTCCTACGGTTACCTCTCAGCAACTTCAGGAGAAGCAGTGGATAAACAATATTCGACAGTATCAGGTTCCATTGCAAAAGTACATGGCTATGATGGAACTTCAGGCAAGCCTTTTTCAACTTATCATATATACATGTGGTGTTGGTACACAGGAGACGAATGAAAGGCTGTTTTACAAACTTCTAGTTGATAATGTTGAGGAACTGCTCCCAATTGTGTACACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATCTTCAAGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCTTGAAGTGTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACAGATGGTGAACGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCAGTTGGTAAATTGGCGTTGTACACAGCATTAGGAGGAGTTCGTCCATCAGCATGTTTGCCTATTACGATTGATGTGGGGACAAACAATGAGAAATTACTGAATGATGAGTTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGAAGGAATATTCTGAGCTTTTGCATGAGTTCATGACTGCTGTCAAGCAAAACTATGGAGAAAAAGTTCTCGTACAGTTTGAAGATTTTGCAAACCATAATGCTTTTGAGTTGCTTGCAAAATATGGTACAACACATCTTGTTTTCAATGATGATATTCAGGGCACTGCATCTGTCGTTCTTGCCGGGGTTGTGGCAGCCTTGAAGCTCATTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGAACAGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAGACAAAGACACCTATAGAAGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTGATTGTTAGTTCAAGAAAGGCTTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAGCATGACCCTGTTGACAGTCTCTTAAATGCTGTTAAGGTAATCAAGCCTACAATTTTGATTGGATCATCAGGAGTGGGAAAACAATTTACAAAGGAAGTAATTGAGGCTGTGACTTCTATCAATGATAAACCTCTTGTTATGGCTCTCTCCAATCCAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCCTACCATTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCGGTAGAATACAAGGGCAAAGTGTACTATTCTGGCCAGGCCAATAATGCTTACATTTTCCCTGGCTTTGGTTTGGGGTTGGTAATCTCAGGAGCAATCCGAGTACATGATGATATGCTTCTGGCAGCTTCGGAAGCATTGGCTAAACAAGTGAGTGAGGAGAACTACAAAAAGGGCTTGATTTATCCTCCATTCTCTGACATCCGAAAAATTTCAGCAAACATAGCTGCACATGTTGCTGCCAAGGCATATGAGCTAGGTTTGGCTACACGTCTTCCTCGTCCTCAGAATCTTTTGAAGTATGCTGAGAGCTGCATGTATACCCCTGTCTACCGAAACTATAGAAGATGA 1827 0.3957 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVTSQQLQEKQWINNIRQYQVPLQKYMAMMELQASLFQLIIYTCGVGTQETNERLFYKLLVDNVEELLPIVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYSELLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGNLADHTFLFLGAGEAGTGIAELIALEMSKQTKTPIEETRKKIWLVDSKGLIVSSRKASLQHFKKPWAHEHDPVDSLLNAVKVIKPTILIGSSGVGKQFTKEVIEAVTSINDKPLVMALSNPTSQSECTAEEAYHWSEGRAIFASGSPFDPVEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYKKGLIYPPFSDIRKISANIAAHVAAKAYELGLATRLPRPQNLLKYAESCMYTPVYRNYRR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00092 608 PRINTS Malic enzyme signature 350 366 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 198 227 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 319 335 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 453 469 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 234 256 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 138 162 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 PRINTS Malic enzyme signature 294 312 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 322 IPR046346 -
Cca08g00092 608 SMART malic_2 132 313 IPR012301 GO:0004471
Cca08g00092 608 PANTHER MALIC ENZYME 4 607 - -
Cca08g00092 608 PANTHER MALIC ENZYME-RELATED 4 607 - -
Cca08g00092 608 SMART Malic_M_2 323 576 IPR012302 GO:0051287
Cca08g00092 608 Gene3D - 50 320 IPR037062 GO:0004471
Cca08g00092 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 323 607 IPR036291 -
Cca08g00092 608 ProSitePatterns Malic enzymes signature. 319 335 IPR015884 GO:0004471
Cca08g00092 608 Pfam Malic enzyme, NAD binding domain 323 575 IPR012302 GO:0051287
Cca08g00092 608 CDD NAD_bind_1_malic_enz 323 601 - -
Cca08g00092 608 Pfam Malic enzyme, N-terminal domain 132 312 IPR012301 GO:0004471
Cca08g00092 608 PIRSF ME 27 608 IPR001891 GO:0004470|GO:0004471
Cca08g00092 608 Gene3D - 321 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00092 Cca-Chr8 1196205 1202196 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00092 K00029 - gmx:100784112 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00092 08 1196205 1202196 Cca11g00259 11 3158304 3164839 ECH
Cca08g00092 08 1196205 1202196 Cca10g00215 10 2265859 2271891 ECH
Cca08g00092 08 1196205 1202196 Cca03g01385 03 32072788 32078524 ECH
Cca08g00092 08 1196205 1202196 Cca08g00092 08 1196205 1202196 ECH
Cca09g02628 09 51908673 51914305 Cca08g00092 08 1196205 1202196 PCT