Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00215 ATGACCCCAAGCAGCAGCAGCAGGTCCGGGGACAGAAACGGCAGCGTTGTGATGGAGACGCCGTTGAAAGAATTGAAAAAGGATTCCCCGGTGGCTGACGTCGACGACAACGCCATCTCCGCCGGTGGCCCTCAGGATGTCTACGGCGAGGATAGGGCAACGGAGGACCACTTTGTCACTCCTTGGAGTGTCTCTGTGGCTAGTGGATATACATTGTTGAGGGATCCCCACTTCAACAAGGGGCTGGCCTTCACTGAAGACGAGAGGGATGCCCACTATCTGCGTGGACTTCTTCCCCCATCAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCGTTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGTCTATTTTACAAGCTTCTTATTGATCACGTTGAAGAGTTACTCCCAGTTGTATATACTCCAACTGTGGGTGAAGCTTGCCAGAAATATGGCAGCATCTTTATGCGTCCTCAGGGTCTCTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTATTAAGGAATTGGCCTGAGCAGAACATTCAAGTCATAGTCGTAACTGACGGAGAACGAATCTTGGGTCTTGGCGATCTTGGTTGTCAGggtatgggaataccagtgggaaaactttcgttatatacagcacttggaggagtccgcccttcagctTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGCTCAATGATGAATTATATATTGGGTTAAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGCACGAATTCATGACAGCAGTTAAGCAAACTTATGGGGAAAAGGTCCTAATTCAGTTTGAAGACTTCGCAAACCACAATGCTTTTGATCTGCTTGAGAAGTATAGATCAACACATCTGGTTTTTAATGATGATATTCAGggaacagcatctgtggtccttgctggactagttgcagctctgaaattggttgggggtaacttgtctgatcacagattcttattccttggtgctggagagGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGTTCCCGCAAAGATTCACTCCAACATTTTAAGAAGCCTTGGGCTCACGAGCATGAACCTGTTAAAAATCTTGTAGATGCTGTTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCGGGACAAGGAAGAACTTTTACTAAAGAGGTGATTGAGGCTATGGCTTCTATTAACAAGAGACCTATTATTCTTTCTCTTTCCAACCCAACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTACAAGTGGAGCCAGGGACGTGCCATTTTTGCAAGTGGTAGTCCATTTCCTCCAGTTGAGTACGAGGGAAAAATGTTTGTGCCTGGCCAGGCCAATAATGCATACATATTTCCTGGATTCGGTCTCGGTTTGATAATGTCTGGAACCATTCGTGTGCATGATGACCTGCTTCTTGCTGCCTCTGAGGCTTTGGCTGCACAAGTGAGCCAAGAGAACTTTGATAAGGGACTCATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCACACATTGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGATTGGCCACTCGCCTTCCCCAACCCAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCTGCCTACAGAAGCTACCGGTGA 1827 0.4154 MTPSSSSRSGDRNGSVVMETPLKELKKDSPVADVDDNAISAGGPQDVYGEDRATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEDERDAHYLRGLLPPSVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEQNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLSDHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLVDAVNQIKPTVLIGTSGQGRTFTKEVIEAMASINKRPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKMFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSQENFDKGLIFPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00215 608 PRINTS Malic enzyme signature 139 163 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 199 228 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 235 257 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 295 313 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 320 336 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 351 367 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PRINTS Malic enzyme signature 454 470 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 PANTHER MALIC ENZYME-RELATED 39 608 - -
Cca10g00215 608 Gene3D - 322 608 - -
Cca10g00215 608 Pfam Malic enzyme, N-terminal domain 133 314 IPR012301 GO:0004471
Cca10g00215 608 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 47 323 IPR046346 -
Cca10g00215 608 ProSitePatterns Malic enzymes signature. 320 336 IPR015884 GO:0004471
Cca10g00215 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 324 607 IPR036291 -
Cca10g00215 608 SMART Malic_M_2 324 577 IPR012302 GO:0051287
Cca10g00215 608 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 39 608 - -
Cca10g00215 608 SMART malic_2 133 314 IPR012301 GO:0004471
Cca10g00215 608 MobiDBLite consensus disorder prediction 1 49 - -
Cca10g00215 608 PIRSF ME 29 608 IPR001891 GO:0004470|GO:0004471
Cca10g00215 608 Gene3D - 67 321 IPR037062 GO:0004471
Cca10g00215 608 CDD NAD_bind_1_malic_enz 324 602 - -
Cca10g00215 608 Pfam Malic enzyme, NAD binding domain 324 576 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00215 Cca-Chr10 2265859 2271891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00215 K00029 - gmx:100800844 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00259 11 3158304 3164839 Cca10g00215 10 2265859 2271891 ECH
Cca09g02628 09 51908673 51914305 Cca10g00215 10 2265859 2271891 ECH
Cca08g00092 08 1196205 1202196 Cca10g00215 10 2265859 2271891 ECH
Cca10g00215 10 2265859 2271891 Cca10g00215 10 2265859 2271891 ECH
Cca10g00215 10 2265859 2271891 Cca03g01385 03 32072788 32078524 ECH
Cca10g00215 10 2265859 2271891 Cca11g00259 11 3158304 3164839 PCT