Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02628 atggagagcacacttaagggcttgagagatggggagtcagtgttggacctcagcccaagatccaccgtcagcggcggcgttgaggacatctacggcgaggatcgcgccaccgaggaccaacttgtcaccccatggacTTTCTCGGTTGCCAGTGGGTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGTTAGCTTTCACTGAGAAGGAGAGAGATGCACACTATTTGCGTGGCCTCCTGCCTCCCACAGTCAGCACTCAGCAACTTCAGGGGAAGAAACTGATGAACAGCATCAGGCAATATGAGGTTCCTTTGCAAAAGTACGTCGCAATGATGGACCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTCATTGATAATGTGGAGGAATTGCTCCCAGTTGTATATACTCCTACTGTTGGCGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAGAAGGGTAAAATCCTTGAAGTTTTAAAGAACTGGCCCGAGAGGAGTATTCAAGTTATTGTTGTAACTGATGGTGAGAGGATTTTGGGACTTGGGGATCTTGGATGCCAGggaatgggaattcctgttggtaaattggctttgtacacagcactaggaggagttcgtccttcagcaTGTTTGCCTATTACTATTGATGTGGGGACAAATAATGAGCAATTACTGAATGATGAATTTTACATTGGGCTAAGACAAAGGAGGGCAACCGGGCAGGAATATTATGAACTTCTACATGAGTTCATGACTGCTGTCAAACAAAACTATGGGGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCAAACCGCAATGCTTTTGAGTTGCTTGCTAAATATGGTACTACTCATCTCGTTTTCAATGATGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTGAAGCTCACTGGTGGTACCTTGGCTGAGCACACATTCCTCTTCCTTGGTGCCGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGACACCTATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCCCGGAAGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAGACTGTTAGCAGTCTCCTAGAGGCCGTTAAGGTGATCAAGCCTACAGTGTTGATTGGATCATCAGGAGTCGGAAGAACATTTACAAAGGAAGTAATTGAGGCTATGGCTTCAAACAATGATAAACCTCTCATTATGGCTCTCTCCAATCCAACGTCACAGTCTGAGTGTACAGCTGAAGAGGCATATCAGTGGAGTGAGGGTCGCGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTATTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCATACATTTTCCCAGGCTTTGGTTTGGGTTTGGTAATTTCAGGAGCAATTCGAGTACATGACGACATGCTTCTAGCAGCCTCGGAAGCCTTGGCTAAACAAGTGAGCGAGGAGAACTACAAAAAGGGCTTGATTTACCCACCATTCTCTAATATCAGAAAAATTTCGGCTAATATAGCTGCAAGTGTTGCTGCCAAGGCATATGAACTAGGCTTGGCTACTCGTCTTCCTCGTCCTCAGAATCTTGTGAAGAATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTACAGGTGA 1776 0.3908 MESTLKGLRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSTQQLQGKKLMNSIRQYEVPLQKYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLRQRRATGQEYYELLHEFMTAVKQNYGEKVLVQFEDFANRNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLTGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTKTPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHETVSSLLEAVKVIKPTVLIGSSGVGRTFTKEVIEAMASNNDKPLIMALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPIEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYKKGLIYPPFSNIRKISANIAASVAAKAYELGLATRLPRPQNLVKNAESCMYTPVYRNYR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02628 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Cca09g02628 591 Pfam Malic enzyme, N-terminal domain 116 296 IPR012301 GO:0004471
Cca09g02628 591 Gene3D - 50 304 IPR037062 GO:0004471
Cca09g02628 591 SMART malic_2 116 297 IPR012301 GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 122 146 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 182 211 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 218 240 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 278 296 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 303 319 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 334 350 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 306 IPR046346 -
Cca09g02628 591 PANTHER MALIC ENZYME-RELATED 9 591 - -
Cca09g02628 591 Gene3D - 305 591 - -
Cca09g02628 591 PIRSF ME 24 591 IPR001891 GO:0004470|GO:0004471
Cca09g02628 591 PANTHER MALIC ENZYME 9 591 - -
Cca09g02628 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Cca09g02628 591 CDD NAD_bind_1_malic_enz 307 585 - -
Cca09g02628 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Cca09g02628 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02628 Cca-Chr9 51908673 51914305 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02628 K00029 - gmx:100782096 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02628 09 51908673 51914305 Cca11g00259 11 3158304 3164839 ECH
Cca09g02628 09 51908673 51914305 Cca10g00215 10 2265859 2271891 ECH
Cca09g02628 09 51908673 51914305 Cca03g01385 03 32072788 32078524 ECH
Cca09g02628 09 51908673 51914305 Cca09g02628 09 51908673 51914305 ECH
Cca09g02628 09 51908673 51914305 Cca08g00092 08 1196205 1202196 PCT