Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01385 ATGTCTAGCGCGTTGAAGGAGGTGAGGAACGGTGGTGAAGTTTCTGTGACGGAGGATTTTAGCAACGGTCATGGAGGGGGTGTGAGGGATTTGTATGGGGAAGATAGTGCCACAGAGGATCAGCTTATCACCCCATGGACTTTCTCAGTGGCCAGTGGATGCAGTTTGCTGAGAAATCCACGCTACAACAAAGGACTGGCCTTTACTGAGGGGGAGAGAGATGCTCACTACTTGCGTGGCCTTTTGCCTCCAGCAGTCTTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCTTGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGGTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCTACAGTTGGAGAAGCATGCCAGAAATATGGAAGCATTTTTAGACGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAAGTCCTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATCTTAGGACTTGGAGATCTTGGTTGCCAGGGAATGGGGATTCCAGTTGGGAAACTTTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCATCATGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTCTACATCGGGCTTAAACAAAAGCGAGCAACTGGGAAGGAATATGAGGAACTTCTGGAGGAGTTTATGCGTGCAGTTAAGCAGAACTATGGGGAGAAAGTTCTCATACAGTTTGAAGATTTCGCCAATCATAATGCATTTGATCTGCTGGAAAAATACAGCTCATCTCATCTTGTTTTTAACGATGATATACAGGGTACAGCATCTGTGGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTATTCCTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTGCAAGAGACACGCAAGAAGATCTGGCTTGTGGACTCAAAGGGACTTATTGTTAGGTCTCGTCTGGAATCACTTCAGCACTTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTAAAGGGGCTTCTAGATGCAGTCAAGGCGATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAGGGAGGTGGTTGAAGCCATGGCATCCTTGAATAAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAAGTCTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGTTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGTGATGACATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGACAAGGGACTGATTTACCCTCCATTCTCCAACATCAGAAAGATATCAGCCCACATTGCTGCTAATGTAGCGGCTAAGGTGTACGATCTAGGTCTGGCTTCTCACTTACCTCGACCTAAGGATCTTGTTAAATATGCCGAAAGTTGCATGTACAGCCCGGGTTACCGAAGCTACCGTTGA 1779 0.4581 MSSALKEVRNGGEVSVTEDFSNGHGGGVRDLYGEDSATEDQLITPWTFSVASGCSLLRNPRYNKGLAFTEGERDAHYLRGLLPPAVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKVLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLKQKRATGKEYEELLEEFMRAVKQNYGEKVLIQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVQETRKKIWLVDSKGLIVRSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTREVVEAMASLNKKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDDMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAHIAANVAAKVYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01385 592 PRINTS Malic enzyme signature 123 147 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 183 212 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 219 241 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 279 297 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 304 320 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 335 351 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 PRINTS Malic enzyme signature 438 454 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 SMART Malic_M_2 308 561 IPR012302 GO:0051287
Cca03g01385 592 SMART malic_2 117 298 IPR012301 GO:0004471
Cca03g01385 592 Gene3D - 306 592 - -
Cca03g01385 592 Pfam Malic enzyme, N-terminal domain 117 297 IPR012301 GO:0004471
Cca03g01385 592 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 308 591 IPR036291 -
Cca03g01385 592 PIRSF ME 25 592 IPR001891 GO:0004470|GO:0004471
Cca03g01385 592 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 33 307 IPR046346 -
Cca03g01385 592 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01385 592 Pfam Malic enzyme, NAD binding domain 308 559 IPR012302 GO:0051287
Cca03g01385 592 PANTHER MALIC ENZYME-RELATED 17 592 - -
Cca03g01385 592 ProSitePatterns Malic enzymes signature. 304 320 IPR015884 GO:0004471
Cca03g01385 592 PANTHER MALIC ENZYME 17 592 - -
Cca03g01385 592 CDD NAD_bind_1_malic_enz 308 586 - -
Cca03g01385 592 Gene3D - 51 305 IPR037062 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01385 Cca-Chr3 32072788 32078524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01385 K00029 - gmx:100818219 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01385 03 32072788 32078524 Cca03g01385 03 32072788 32078524 ECH
Cca09g02628 09 51908673 51914305 Cca03g01385 03 32072788 32078524 ECH
Cca08g00092 08 1196205 1202196 Cca03g01385 03 32072788 32078524 ECH
Cca11g00259 11 3158304 3164839 Cca03g01385 03 32072788 32078524 ECH
Cca10g00215 10 2265859 2271891 Cca03g01385 03 32072788 32078524 ECH