Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0926 ATGTCGTCCGCTGGTGTCACTACTCTTAGTGTGGTTCCTAGTGAGCCATTGCTGTCTCCAAAGCCATTCCATTTCCCATCATCATCACACTTGTCTTTGGAAGATCAATCCATTTTCATATATCTCTCCTTTTCGGGCTCATTGACTCCAATCCGTGTTATGGAATGGGATACCATTGAGTCTGTGAAATTCAAAATCCAAAGGAGCGAGAGCCTTCCATTTTTAACCAACAAACAAAAGTTGGTTTATGCCGGCCGAGAGCTGGCGCGAAGTAATTCGTTGCTCAAGGACTATGGAGTAACGGATGGAAATGTATTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTGTGGGAAGGAATTCACGTTCCAGGTGGAACGCGATAGGGATGTTGGGTATCTAAAGCAACGTATTGCCAAAAGGGAGAAGCAATTTGATGATCCTGAGGAGCAGGAACTTGTGTGCAATGGGGAAAGGCTTGAGGATCAGAGGCTTATTGATGATATCTGCCGCAAACATAATGATGCTGTGGTACATTTGTTTGTTAGAAAAAAGCATGCCAAAGTTCAGAGAAGACCCCTTGAGTTGTCTGTTGTAGCAACAGATTTGATTGATAAGAGAAAAAATGATGTCAATGGAAATGCTTGTGGGAGTAATTATGAGGTTGGTAAAGAAGATACTATTAGGAAGTCCGATGCAATTCAAAGAGCCGTGCCTAGAAAGCTTCCTGGTAGAGATTTTATTTTGGAGCCAGTTATTGTTAACCGTAAAATCGAATTAGCTCCAGCAATTTGGAATATGGTGAACTCTACATATGATGGACTAGATAGCGGAAACTATCCAATCAGATCTGCAGAGGGTTCCGGGGGAGCTTACTTTATGCTTGATTCATCTGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAATCCTAGAGGCCTTCCTTTTTCGGTAGATGGTGTAGGGTTAAAAAAAGGTACAAGAGTTGGTCAAGGAGTATTCAGGGAAGTTGCAGCCTATGTTCTAGACCATCCATTGAGTGGGCGCCGCTCATTATTTGGTGAGAAGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTGAAGTGCTTGCATAGAGCATTTAACTATCGTGGAGAGTTGACTGCTAAGATTGGCTCCATGCAGATGTTTGTGGAAAATAGTGGAAGTTGTGAAGATATGGGGCCTGGGGCTTTCCCCGTAAAGGAAGTGCATAAAATTACTGTGTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGAAGAGGACAGTGATCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAATTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCTCGCCAGCCATACTCCTCAGAAACTATCAACTACATAAAATCGCTGGATGCTGAAGAAGATATTTCCCTTTTGAAGTTTCATGGATGGGATTTGCCAGTTGAATGCGCCCATACACTTAGGATTTCAACCATGCTATTGAAGAAAGGGGTAGAAAGGGGATTGACCCCTTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATTGAGGAAATAGTCCAAGCTGCAATGGATTCTGTTCTTCCTGGAACAAGTGAAGCAACATTCATGGATGCTGTTTACCATATCATGGACAAGCGCCTTGATGAGATTGTCAGCTCTCGTTCATAA 1800 0.4272 MSSAGVTTLSVVPSEPLLSPKPFHFPSSSHLSLEDQSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRSESLPFLTNKQKLVYAGRELARSNSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSCGKEFTFQVERDRDVGYLKQRIAKREKQFDDPEEQELVCNGERLEDQRLIDDICRKHNDAVVHLFVRKKHAKVQRRPLELSVVATDLIDKRKNDVNGNACGSNYEVGKEDTIRKSDAIQRAVPRKLPGRDFILEPVIVNRKIELAPAIWNMVNSTYDGLDSGNYPIRSAEGSGGAYFMLDSSGQKYVSVFKPIDEEPMAVNNPRGLPFSVDGVGLKKGTRVGQGVFREVAAYVLDHPLSGRRSLFGEKKGFAGVPPTLMVKCLHRAFNYRGELTAKIGSMQMFVENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISTEEDSDQSVLIPIDHGYCLPTNFEDCTFEWLYWPQARQPYSSETINYIKSLDAEEDISLLKFHGWDLPVECAHTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEIVQAAMDSVLPGTSEATFMDAVYHIMDKRLDEIVSSRS* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0926 599 SUPERFAMILY Protein kinase-like (PK-like) 435 594 IPR011009 -
Apr4g0926 599 Gene3D - 37 111 - -
Apr4g0926 599 Pfam Ubiquitin family 118 191 IPR000626 GO:0005515
Apr4g0926 599 Pfam Ubiquitin family 40 112 IPR000626 GO:0005515
Apr4g0926 599 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 597 IPR044571 -
Apr4g0926 599 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 597 - -
Apr4g0926 599 SMART ubq_7 38 111 IPR000626 GO:0005515
Apr4g0926 599 SMART ubq_7 116 190 IPR000626 GO:0005515
Apr4g0926 599 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Apr4g0926 599 SUPERFAMILY Ubiquitin-like 38 112 IPR029071 -
Apr4g0926 599 SUPERFAMILY Ubiquitin-like 110 193 IPR029071 -
Apr4g0926 599 CDD Ubl_ubiquitin_like 118 188 - -
Apr4g0926 599 Gene3D - 117 204 - -
Apr4g0926 599 Pfam Phosphatidylinositol 3- and 4-kinase 294 543 IPR000403 -
Apr4g0926 599 ProSiteProfiles Ubiquitin domain profile. 118 175 IPR000626 GO:0005515
Apr4g0926 599 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 285 578 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0926 Apr-Chr4 7505979 7509305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0926 35 593 Acyl Lipid Metabolism Gene Families AT5G24240 55.026 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0926 - - gmx:100791631 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0926 4 7505979 7509305 Apr1g0669 1 7975256 7979045 ECH
Apr4g0926 4 7505979 7509305 Apr4g0926 4 7505979 7509305 ECH
Apr10g1216 10 24525893 24529255 Apr4g0926 4 7505979 7509305 ECH
Apr7g0516 7 11576270 11578435 Apr4g0926 4 7505979 7509305 ECH
Apr2g1283 2 19064484 19066612 Apr4g0926 4 7505979 7509305 ECH
Apr4g0926 4 7505979 7509305 Apr10g1216 10 24525893 24529255 PCT