Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1216 ATGTCATCTGCTGGTGTCACCACCCTTAGTCCTGTTCCAAAGGAGCTATTGTTGTCTCCAAATGGATTCTATACCCCACTGCACTTGTCTTTGGATGATGAGTTCATTTTCATATATCTATCCTATTCGGGATCTTTGACTCCGATGCGTGTTCTTCCCTGCGATACCATTGAGTCGGTAAAACTCAAAATCCAAAGGGCTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGCCGGGAGTTAGCACGGAGCAATTCTCTACTGAAGGACTATGGGGTTACGGAAGGAAATGTTTTGCATTTGGTAATCAGACTGTCAGATCTTCAGACTATCAGTGTGAGGACTTCTTGTGGGAAGGAGTTTACTTTTCAGGTGGAAAGATGCAGAGATGTTGGATATGTTAAGCAACAGATTGCGAAAAAGGAGAAGCGGTTTGCTGATCCTGAACAGCAGGAAGTTGTGTGTAATGGGGAGCAGCTTGAGGATCAGAGGCTTATTGATGATATCTGCAGCAAATATAATGATGCAGTGATTCATCTTTTTGTTAGAATGAGATATGCTGAAGTTAGGACAGGACAAGATGAGTTGTCCCCAGTTATTGTTAACCCGAAAATTGAATTAGCTTCAGAGATTTGGGATATGATAAACTCTACATATGAAGGGCTAGATAATGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAACAGGGCAAAAGTATATATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTGCCTTTGTCATTAGATGGTGAAGGTTTAAAGAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGTGGACGCCGATCATTATTTGGTGATGAGAAGGGCTTTGCTGGGGTTCCCCCAACTGTTATGGTTAAGTGCTTGCATAAAGGATTTAATCATCCAGGGGACTTAAATGCTAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGTCCTGGGGCTTTCCCAGTGAAGGAAGTGCATAAAATTACTGTGCTGGACATTAGACTAGCAAATGCAGATAGGCATGCCGGAAATATTTTGATTGGGAAAGAGGAGGAAAATGGCCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCTACCAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGATCATTCACTATATAAAGTCACTGGATGCTGATGAAGATATTTCCCTTCTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGCGCACGCACTCTTCAGATCTCAACCATGCTTCTAAAGAAGGGAGTTGTGAGAGGCATGACCCCTTTTGCCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATTGAGGGCATTGTAAAAGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCGACATTTCTGGATGCTGTTTCTGACATCATGGACCAGCACCTTGATGAGATCACCAGTTCCATTTCTTAA 1635 0.4287 MSSAGVTTLSPVPKELLLSPNGFYTPLHLSLDDEFIFIYLSYSGSLTPMRVLPCDTIESVKLKIQRAEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSCGKEFTFQVERCRDVGYVKQQIAKKEKRFADPEQQEVVCNGEQLEDQRLIDDICSKYNDAVIHLFVRMRYAEVRTGQDELSPVIVNPKIELASEIWDMINSTYEGLDNGNYPIRSAEGTGGAYFMLDSTGQKYISVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPMSGRRSLFGDEKGFAGVPPTVMVKCLHKGFNHPGDLNAKIGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILIGKEEENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIHYIKSLDADEDISLLKFHGWDLPVECARTLQISTMLLKKGVVRGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEATFLDAVSDIMDQHLDEITSSIS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1216 544 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 230 523 IPR000403 -
Apr10g1216 544 CDD Ubl_ubiquitin_like 116 186 - -
Apr10g1216 544 Pfam Phosphatidylinositol 3- and 4-kinase 239 488 IPR000403 -
Apr10g1216 544 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 201 543 IPR044571 -
Apr10g1216 544 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 202 IPR044571 -
Apr10g1216 544 SUPERFAMILY Ubiquitin-like 109 190 IPR029071 -
Apr10g1216 544 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Apr10g1216 544 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 201 543 - -
Apr10g1216 544 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 202 - -
Apr10g1216 544 SUPERFAMILY Protein kinase-like (PK-like) 380 540 IPR011009 -
Apr10g1216 544 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Apr10g1216 544 Pfam Ubiquitin family 116 190 IPR000626 GO:0005515
Apr10g1216 544 SMART ubq_7 36 109 IPR000626 GO:0005515
Apr10g1216 544 SMART ubq_7 114 188 IPR000626 GO:0005515
Apr10g1216 544 SUPERFAMILY Ubiquitin-like 27 110 IPR029071 -
Apr10g1216 544 Gene3D - 36 115 - -
Apr10g1216 544 Gene3D - 116 195 - -
Apr10g1216 544 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1216 Apr-Chr10 24525893 24529255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1216 1 538 Acyl Lipid Metabolism Gene Families AT5G24240 56.326 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1216 - - gmx:100815111 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1216 10 24525893 24529255 Apr1g0669 1 7975256 7979045 ECH
Apr10g1216 10 24525893 24529255 Apr10g1216 10 24525893 24529255 ECH
Apr10g1216 10 24525893 24529255 Apr4g0926 4 7505979 7509305 ECH
Apr7g0516 7 11576270 11578435 Apr10g1216 10 24525893 24529255 ECH
Apr2g1283 2 19064484 19066612 Apr10g1216 10 24525893 24529255 ECH
Apr4g0926 4 7505979 7509305 Apr10g1216 10 24525893 24529255 PCT