Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0669 ATGGCTTGTGTGGCACTTCGTACAGTTCATGAAGAATTGATTAACACCCATGGCCATGGTGAATTTACTGGCTGCTTCAGTCCTCATTTGAAGGATTCAATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCCATGCATATTATGAAGACAGATTCAATTGCTTCAGTGAAGCTGAGAATTCAAACCTTCAAAGGTTTTTTTGTCAAGAAACAGAAACTCGTTTTTGAAGGTAAGGAGTTGGCTCGTAACAAATCTTGTATCCATGATTATGGTGTTGGTGATGGGAATGTGTTGCACCTGGTGCTTAGGCTTTCTGATCTTAAAGCTATCACAGTTAGGACTGTGTGTGGAAAGGAGTTTGGGTTTTATGTTGAGAAGAATAGGAATGTAGGTTATGTGAAGCAGCAGATTGCAAGAAAAGGGCAAGGGTTCTTGAATCTCAAGGATCAAGAATTGATATGTGAGGGTGAGGCGCTTGAAGACCAGAGACTTATTGAGGATATCTGCAAGGACAATGATGCTGTGATTCATTTTTTGGTCCGGATATCAGATGCTAAGGTCAGGACTCAACCAGTTGAGAAGGATTTTGAATTATCAATTGAGGCATCATGTGCGCATAATATGGTTCCAAAGTTAAGGGGAGACCAGTTAGGATCAGTGTCTGTCACAAATAAGGTCCTAAAAAGTAACCAACTTACAAGAGATTTTCTTTTGGAACCAATTATTTTGAATTCCAATATCAAAATTCCGCTAGTGGTCCAGGAGCTAATTAAGATTACTTCGGAGGGGTTAGAAAAAGGATATAAACCAATTCAGTCTTCAGAGGGATCAGGAGGAGCTTATCTCATGCAAGATTCAACTGGTTTAAAGTATGTTTCTGTTTTCAAGCCAGTTGATGAGGAGCCAATGGCAATCAATAATCCTAGAAGCCTACCTGTCTCTGTCGATGGTGAAGGATTAAAAAAAGGTACACGAGTTGGGCAAGGTGCATTGAGAGAAGTAGCAGCTTACATTTTGGATCATCCTAGGAAAGGACCACGTTCATATTGTAACAATGAAGAACCGGGATTTGCTGGGGTTCCTCCAACAGTCATGGTCAAATGCATGCACAAAGGATTTCATAATACAGAAAGTTATCACAATGGTTCAGGTAATATCAAAATAGGATCGCTTCAGATGTTCGTGAGGAATATTGGAAGTTGTGAAGACATGGGCCCTAGTGCATTTCCGGTGGAAGAGGTACACAAGATCTCGGTGCTGGACATCAGGTTGGTAAATGCAGATAGGCATGCTGGGAACATTTTGATTACCAAGGATGATGAAGATGGTGAGGCTGTCCTTATTCCAATTGATCATGGCTATTGCTTGCCTGAGAGTGTAAGTCTTCTGACACTGAATTTTGAAGACTGCACTTTTGATTGGTTATACTGGCCCCAAGCAAAGGAGCCTTACTCCCCAGATACCATTGACTACATAAAATCTCTGAATGCTGAAGAAGATATTAAGCTTTTAAAGTTTCATGGATGGGATCTTCCTCCTGAATGTGCCCGAATCCTTCGTATATCTACCATGCTTCTTCAGAAAGGTGCAGAGAGAGGACTCACTCCTTTTGCCATTGGAAGCATCATGTGTAGAGAAACATTGAAGAAAAAATCTGTCATTGAGGAGATAATTCAGGAAGCAGAGAAAGCTGCACTTTCTGGAACAAGTGAAGCTGCATTTCTTGATCATGTTTCAGTGATCATGGATAGTTATTTAGCAAAGCTATTCCCATGA 1782 0.4068 MACVALRTVHEELINTHGHGEFTGCFSPHLKDSILIYLTVGGSVIPMHIMKTDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNKSCIHDYGVGDGNVLHLVLRLSDLKAITVRTVCGKEFGFYVEKNRNVGYVKQQIARKGQGFLNLKDQELICEGEALEDQRLIEDICKDNDAVIHFLVRISDAKVRTQPVEKDFELSIEASCAHNMVPKLRGDQLGSVSVTNKVLKSNQLTRDFLLEPIILNSNIKIPLVVQELIKITSEGLEKGYKPIQSSEGSGGAYLMQDSTGLKYVSVFKPVDEEPMAINNPRSLPVSVDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSYCNNEEPGFAGVPPTVMVKCMHKGFHNTESYHNGSGNIKIGSLQMFVRNIGSCEDMGPSAFPVEEVHKISVLDIRLVNADRHAGNILITKDDEDGEAVLIPIDHGYCLPESVSLLTLNFEDCTFDWLYWPQAKEPYSPDTIDYIKSLNAEEDIKLLKFHGWDLPPECARILRISTMLLQKGAERGLTPFAIGSIMCRETLKKKSVIEEIIQEAEKAALSGTSEAAFLDHVSVIMDSYLAKLFP* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0669 593 SUPERFAMILY Protein kinase-like (PK-like) 420 587 IPR011009 -
Apr1g0669 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 591 IPR044571 -
Apr1g0669 593 SMART ubq_7 34 105 IPR000626 GO:0005515
Apr1g0669 593 SMART ubq_7 110 183 IPR000626 GO:0005515
Apr1g0669 593 CDD Ubl_ubiquitin_like 112 179 - -
Apr1g0669 593 Gene3D - 111 199 - -
Apr1g0669 593 ProSiteProfiles Ubiquitin domain profile. 32 105 IPR000626 GO:0005515
Apr1g0669 593 Pfam Phosphatidylinositol 3- and 4-kinase 278 540 IPR000403 -
Apr1g0669 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 269 575 IPR000403 -
Apr1g0669 593 SUPERFAMILY Ubiquitin-like 106 185 IPR029071 -
Apr1g0669 593 Pfam Ubiquitin family 40 106 IPR000626 GO:0005515
Apr1g0669 593 Pfam Ubiquitin family 112 183 IPR000626 GO:0005515
Apr1g0669 593 ProSiteProfiles Ubiquitin domain profile. 110 187 IPR000626 GO:0005515
Apr1g0669 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 2 591 - -
Apr1g0669 593 SUPERFAMILY Ubiquitin-like 39 107 IPR029071 -
Apr1g0669 593 Gene3D - 28 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0669 Apr-Chr1 7975256 7979045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0669 1 588 Acyl Lipid Metabolism Gene Families AT5G24240 60.204 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0669 - - gmx:100812724 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1216 10 24525893 24529255 Apr1g0669 1 7975256 7979045 ECH
Apr4g0926 4 7505979 7509305 Apr1g0669 1 7975256 7979045 ECH
Apr1g0669 1 7975256 7979045 Apr1g0669 1 7975256 7979045 ECH