Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1283 ATGTCGATTGCTGATTGTGCTTTGAGTTCTATTTGCAAAGAAAAGGTGTATTGGGAAGGGCAACCAGGACATTGTTCTGGTGAGCCAATCCTGATTTACCTTACTGTGGATGGTGCTGTGACCCCAATGCGTGTGTTGGAGTCTGATTCCATTGCTTCGGTGAAACTGAGGATTCAGCAGTGCAAAGGCTTTGTGGTGAAGAAGCAGAAGCTGGTTTTTGGTGGAAGAGAGCTGGCTCGAAATGGCACACAAATCAAGGAGTATGGTGTCACTGATGGCAATGTTCTTCACTTGGTTCTTCGCCTCTCCGATCTTCTCTTCATTGTTGTGAGGACTGCTTGTGGGAAGGAATTTGAATTCCATATTGATAGGCATAGAAATGTGGGGTATCTTAAGCAACGGATTAGGAAGAAAGGGGAAGGTTTTGTTGATCTTGAGGATCAAGAGCTTTTCTGCAATGATGAGAAGCTTGATGACCAGAGACTCTTCCATGACATATGCAAGAGTGATAATGATGTGGTTCATTTGATAATTAAGAAATCAGCTAAGGTTAGGACTACACCAATTCACAAAGATTTGAAGCTTTTGGTTGAGGCACCTACACCAGTTGAGAGCACAAATGAGAGAGTACAAGTAGGACAGAATAGGAATAAACAAGTTCAAATAGCAAAGGTACCACCTGATGTAGGTTTCTGGTTGGAACCGATTGTCGTAAATCCTAAGATCAATTTTTTTCCTTTCCAGTGGGACATGATCAACTCCACATTTGAGGGTTTGAAGAAAGGAAATCGCCCTGTAAGGTCCTCCGATGGCACAGGAGGGACTTACTTCATGCAAGATTCAACAGGTCAGGAGCATGTTTCAGTTTTCAAGCCCATGGATGAGGAACCAATGGCTGTGAACAACCCAAGAGGGTTACCAAGTTCATCCAATGGTGAAGGCTTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCTTTGAGGGAAGTTGCAGCTTACATTTTAGATCATCCAAGGAGTGGGCCACGTTTGGTGTCAGGTGAAGCAATAGGCTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTACACCAAGAATTTAACCACGCAAATGGGTTTGCTTGCTCATCAAAACATATCAAGGTTGGGTCTTTACAGAAGTTCATGAATAATAATGGTAATTGTGAGGACATTGGACCCGGGGCTTTCCCAGTGGAGGAGGTGCACAAGATTACTGTGCTTGACATAAGAATGGCTAATACAGATAGGCATGCTGGGAATATATTGATCAGAAAGGAGGCAGATGGCCACACAAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCGCAAGCACGACAGCCTTACTCTTCTGAGACAGTTGATTATATCAATTCTCTGGATGCTGAAAGAGACATAGAACTTTTGAAACAATATGGATGGGATATTCCACTTCAGTGTGCGCGAATACTACGCATTTCCACAATGTTGCTGAAGAAAGGAGTTGAGAGAGGTCTTACTCCCTATGCAATTGGAAGCATAATGTGTCGGGAAATTTTAAACAAGGAATCTGTAATTGAGGAGATTGTTGGTGAGGCTCAAGATTCCTTACTTCCTGGCATGGAGGAATCGGCATTTCTTGAATCCATCTCACAGATCATGGATTCTCGCCTTGATAAGTTTGCAAAATAG 1734 0.4302 MSIADCALSSICKEKVYWEGQPGHCSGEPILIYLTVDGAVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFGGRELARNGTQIKEYGVTDGNVLHLVLRLSDLLFIVVRTACGKEFEFHIDRHRNVGYLKQRIRKKGEGFVDLEDQELFCNDEKLDDQRLFHDICKSDNDVVHLIIKKSAKVRTTPIHKDLKLLVEAPTPVESTNERVQVGQNRNKQVQIAKVPPDVGFWLEPIVVNPKINFFPFQWDMINSTFEGLKKGNRPVRSSDGTGGTYFMQDSTGQEHVSVFKPMDEEPMAVNNPRGLPSSSNGEGLKRGTKVGEGALREVAAYILDHPRSGPRLVSGEAIGFSGVPPTVMVQCLHQEFNHANGFACSSKHIKVGSLQKFMNNNGNCEDIGPGAFPVEEVHKITVLDIRMANTDRHAGNILIRKEADGHTKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSSETVDYINSLDAERDIELLKQYGWDIPLQCARILRISTMLLKKGVERGLTPYAIGSIMCREILNKESVIEEIVGEAQDSLLPGMEESAFLESISQIMDSRLDKFAK* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1283 577 ProSiteProfiles Ubiquitin domain profile. 106 183 IPR000626 GO:0005515
Apr2g1283 577 SUPERFAMILY Ubiquitin-like 34 103 IPR029071 -
Apr2g1283 577 Pfam Ubiquitin family 108 180 IPR000626 GO:0005515
Apr2g1283 577 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Apr2g1283 577 SUPERFAMILY Protein kinase-like (PK-like) 419 575 IPR011009 -
Apr2g1283 577 CDD Ubl_ubiquitin_like 108 177 - -
Apr2g1283 577 Pfam Phosphatidylinositol 3- and 4-kinase 271 524 IPR000403 -
Apr2g1283 577 SMART ubq_7 106 179 IPR000626 GO:0005515
Apr2g1283 577 SMART ubq_7 30 101 IPR000626 GO:0005515
Apr2g1283 577 SUPERFAMILY Ubiquitin-like 102 180 IPR029071 -
Apr2g1283 577 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 576 IPR044571 -
Apr2g1283 577 Gene3D - 107 195 - -
Apr2g1283 577 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Apr2g1283 577 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 262 559 IPR000403 -
Apr2g1283 577 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 576 - -
Apr2g1283 577 Gene3D - 31 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1283 Apr-Chr2 19064484 19066612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1283 1 576 Acyl Lipid Metabolism Gene Families AT5G24240 56.379 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1283 - - gmx:100809172 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1283 2 19064484 19066612 Apr2g1283 2 19064484 19066612 ECH
Apr2g1283 2 19064484 19066612 Apr10g1216 10 24525893 24529255 ECH
Apr2g1283 2 19064484 19066612 Apr4g0926 4 7505979 7509305 ECH
Apr7g0516 7 11576270 11578435 Apr2g1283 2 19064484 19066612 PCT