Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0516 ATGTCGGTTTGTGATGTTGCTCTGAGACCGATTTGCAAGGAATTGGTGCATTGGCAAGGAAGCTGCACTGGCGAATCCATCGTGATATATCTCACAGTGGAGGGTGCTGTGACACCAATGCGGGTTTTGGAGTCTGATTCCGTTGCTTCAGTGAAAATGAGGATTCAGACACGCAAAGGGGTTGCAGGGAAGAAGCACAAGCTGGTTTCTAATGGCAGAGAGCTTGCTCGCAACGATGCACTCATCAAGGAGTATGATGTCACTGCAGGGAATGTTCTTCACTTGGTTCTTCGTCTTTCTGACATGATCTTCATTGTTTTGAGAACCACCTGTGGCAAGGAGTTTGAGTTACAAATTGATAGGCATAGAAACGTGGGGTATCTTAAGCAACGCATTAAGAAGAAAGGGAAAGGTTTTATTGATCTCGAGGATCGAGAGCTATTCTGTGGTGGGGAAGAGCTTGATGATCATAGGCTCTTCCGTGATATATGCAAGAGTGATGATGATGTGATTCACTTGATAGTTCAAAAGTCAGCAAAAGTTAAGGCCAAACCAGTTCACCAAGGTTTGGAGCTTTTTGTTGTGGCAGATTCTCAAGGTGTGGGAGAGAATCAGATACCACCTGGAGTAGATTTCTGGTTGGAACCAGTTTTTGTGAATCCTACGATCAAGTTTTTTCCTTTCCTTTGGGACATGATCGACTCCACATTCGATGGCTTGAAAAATGGAAATCACCCTATCAGGTCTTCTGAGGGCACAGGTGGGACTTACTTCATGCAAGACTCAAAAGGTGTGGACTATGTTTCAGTGTTTAAACCCATTGATGAGGAACCTATGGCAGTGAACAACCCGCGAGGCCTAACGAGTTCATCTGATGGTGAAGGTTTGAAAAGAGGGACAAGGGTGGGAGAAGGAGCTTTGAGAGAAGTTGCAGCCTATATATTGGATCATCCAAGGGCTGGACCACGTTTGGTATCAGGTGAAGCAATAGGCTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTACACCAAGCCTTTAATAACCCAATTGGGTTTGGTTGCTCTTCTAAGATGGGGTCATTGCAAATGTTCATGGACAATGATGGTAATTGTGAGGAAATTGGACCACGGGCTTTTTCAGTGGAAGAAGTACATAAGATAACCGTGCTTGATATAAGAATGGCCAATGCAGACAGGCATGCTGGGAATATTCTGTTCAGAAAAGAGGCAAATGGCCACACTATGCTCATTCCTATTGATCATGGCTACTGTCTACCAGAAAAATTTGAGGATTGCACATTTGATTGGCTTTACTGGCCCCAAGCACGTGAACCATACTCTCCAGGTACAGTTGAATATATTAAATCTCTTGATGCTGAAAAAGATATAGAACTTTTAAAACATTATGGGTGGGATGTTCCACTTGAGTGTGGACGAACTCTCCGAATCTCCACAATGTTATTAAAGAAAGGGGTTGAGAGAGGTCTCACACCCTATGCCATTGGAAGCATTTTGTGTAGGGAAAAAGTGAACAAGGAATCAATGTTGGAGGAGATTGTTTATGAAGCGCAAGAATCAGGGTTAGCTGGTACAGGGGAATCTGTTTTTCTTGAATCTGTCTCCCAGATTATGGATTCCCGCCTTGATAAGCTTTCAAAATGA 1668 0.4376 MSVCDVALRPICKELVHWQGSCTGESIVIYLTVEGAVTPMRVLESDSVASVKMRIQTRKGVAGKKHKLVSNGRELARNDALIKEYDVTAGNVLHLVLRLSDMIFIVLRTTCGKEFELQIDRHRNVGYLKQRIKKKGKGFIDLEDRELFCGGEELDDHRLFRDICKSDDDVIHLIVQKSAKVKAKPVHQGLELFVVADSQGVGENQIPPGVDFWLEPVFVNPTIKFFPFLWDMIDSTFDGLKNGNHPIRSSEGTGGTYFMQDSKGVDYVSVFKPIDEEPMAVNNPRGLTSSSDGEGLKRGTRVGEGALREVAAYILDHPRAGPRLVSGEAIGFSGVPPTVMVQCLHQAFNNPIGFGCSSKMGSLQMFMDNDGNCEEIGPRAFSVEEVHKITVLDIRMANADRHAGNILFRKEANGHTMLIPIDHGYCLPEKFEDCTFDWLYWPQAREPYSPGTVEYIKSLDAEKDIELLKHYGWDVPLECGRTLRISTMLLKKGVERGLTPYAIGSILCREKVNKESMLEEIVYEAQESGLAGTGESVFLESVSQIMDSRLDKLSK* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0516 555 SUPERFAMILY Ubiquitin-like 32 100 IPR029071 -
Apr7g0516 555 ProSiteProfiles Ubiquitin domain profile. 103 180 IPR000626 GO:0005515
Apr7g0516 555 SMART ubq_7 27 98 IPR000626 GO:0005515
Apr7g0516 555 SMART ubq_7 103 176 IPR000626 GO:0005515
Apr7g0516 555 Pfam Ubiquitin family 35 99 IPR000626 GO:0005515
Apr7g0516 555 Pfam Ubiquitin family 106 177 IPR000626 GO:0005515
Apr7g0516 555 SUPERFAMILY Ubiquitin-like 98 177 IPR029071 -
Apr7g0516 555 ProSiteProfiles Ubiquitin domain profile. 29 102 IPR000626 GO:0005515
Apr7g0516 555 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 243 537 IPR000403 -
Apr7g0516 555 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 555 - -
Apr7g0516 555 Gene3D - 104 189 - -
Apr7g0516 555 Pfam Phosphatidylinositol 3- and 4-kinase 252 502 IPR000403 -
Apr7g0516 555 Gene3D - 27 103 - -
Apr7g0516 555 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 555 IPR044571 -
Apr7g0516 555 CDD Ubl_ubiquitin_like 105 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0516 Apr-Chr7 11576270 11578435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0516 1 554 Acyl Lipid Metabolism Gene Families AT5G24240 55.594 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0516 - - gmx:100787492 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0516 7 11576270 11578435 Apr7g0516 7 11576270 11578435 ECH
Apr7g0516 7 11576270 11578435 Apr10g1216 10 24525893 24529255 ECH
Apr7g0516 7 11576270 11578435 Apr4g0926 4 7505979 7509305 ECH
Apr7g0516 7 11576270 11578435 Apr2g1283 2 19064484 19066612 PCT