Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2938 ATGGAAATTGAAGCAAGGGCAGCACCAATGGTGGCAAAGAAGCTTTTGAACATTCTAAGAATAGTTATGGTCATGTTAAGAAAAGGTATATCAAAGAGCAAACTCATTTCCGAGTTCAATCTCTTGCTCAAGCGCGGAAAGATAGCAGCCAGCAACGCAATCTCCACCACTCTCACTCTCCACCACCACTACGCCGCCGCCTTCACGCGCCGCCGTTCCTCCTTCCGCAACAACAAAAACCTCTCCTTCTACCCTCGCGAATACCAATTCAGCTGCACTAGTAGCCCTGCCTTTAATTACCACAGTCGTCGCCACCATCGCTGCCACCACCACGAAGACGTTTCAACCCTATGTAAGGTTCTTGAGATGCTAAAAGACAACAACAACAATAACAACTATGAGATGGTGATGGATTCGCCATTGATGCCATTGCCAGAGTTTGGAAAAAGCCCTAAGCAGTTGAGGATCACTGATTCCCCTTTTCCTCTCAAAGACGAAGAAGATTTTGATGATGACGATGGTGGCAAAATTGATATTAAAGCTGAAGAGTTTATTAAAAGGTTTTATAAGAATCTTCACTCACAACACACAAATTCTCCTTATTATTACTCTTGGGACCGATAA 624 0.4407 MEIEARAAPMVAKKLLNILRIVMVMLRKGISKSKLISEFNLLLKRGKIAASNAISTTLTLHHHYAAAFTRRRSSFRNNKNLSFYPREYQFSCTSSPAFNYHSRRHHRCHHHEDVSTLCKVLEMLKDNNNNNNYEMVMDSPLMPLPEFGKSPKQLRITDSPFPLKDEEDFDDDDGGKIDIKAEEFIKRFYKNLHSQHTNSPYYYSWDR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2938 207 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 9 207 - -
Ahy15g2938 207 Pfam Cotton fibre expressed protein 176 195 IPR008480 -
Ahy15g2938 207 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2938 Ahy-Chr15 149513120 149514460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2938 - - gmx:100783043 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2938 15 149513120 149514460 Ahy19g0340 19 3944003 3945102 ECH
Ahy15g2938 15 149513120 149514460 Ahy18g0182 18 1368740 1369557 ECH
Ahy15g2938 15 149513120 149514460 Ahy15g2938 15 149513120 149514460 ECH
Ahy15g2938 15 149513120 149514460 Ahy5g2328 5 96076542 96077165 hybridization
Ahy3g1713 3 33267537 33269109 Ahy15g2938 15 149513120 149514460 PCT
Ahy15g2938 15 149513120 149514460 Ahy3g1713 3 33267537 33269109 PCT