Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1728 ATGACAATGGGAGAAGAGTCCTTAGCAGCAGCAATTGTATCAATAAAAAAAGGTGCATACTTACTGAAGTGTGGACGTAGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTATTCTGGACAGCATGAAAAGCATTTGCGACTGAATGCAGTTACAAAAATTGTTCAAGGACAGGGAAATATAAAGTCCCAGAAGCAAAATCAAAACGGAAAAGAGTGCCATTCATTTTCTCTAATGTATGCAAATGGTGAACGCTCACTCGATCTGATATGCAAGGACAAAGCACAAGCTACTTCTTGGTTTGTGGGTTTGAAAGCTGTGATATCTCAGTCCCAGCATCCAAGACCCTTTAGTAGTTTAAGAAGTTGCAAAGGCGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAATTTACTAAGGTACACAGTGTATGTGCAAGTCCTGCTTTGTCACTTTCTGAGAGGTGCTTCTCTGATGGCTTATCATACGCTTATGATAGCTTCTATTCATCGGAGTCTTTCCTGTCCAATACTCAAAGTTCAATTGATAATTCAGTCCCAAACTCTCCATATATCGATCCAGATGTTCTTAAGAAGAAAGGATCAACATATGTTGACCCGGAATATCAGAAGAATTTGCCTTACAGGTATCTGGTGTCTTCTACCTCCCCACGAGTAGGAATCAACAATGTGTTGAAAGATGTCATGATCTGGGGTGGAGGGATTGCAGGAACTGCAGGGAACGGGAATGATCGGTTTGTCAACCAGAAGGGGATTCGCGCCGTGTTTCCAAAGTTATTGGAATCCACTATGACATTAGATGTACAATACATAGCTTTAGGAGAAAAACATGCTGCTCTAGTTACTAAACAAGGGGAAGTGTTATGTTGGGGTCAGGGGAAAGGGGGAAGGCTAGGGCACAAAATTGATATTGATGTAAACTCCCCAAAAATGATTGATTCTCTTAATGGGATCCATATAAAATATACTGCCTGCGGTGAGTATCACACATGTGCTTTGACAGATTCTGGTGAGGTATATGCATGGGGTGATGATTGCTGTGGCGCCAATCTTGCCGGTGAAGGGAAATTTATCAGTCAGTGGATACCACATAAACTTTCAGGTCCCTTATATGGTATTAGTAtatcaaatgttgcttgtgggGAATGGCATACTGCAATCGTCTCTAGCTGTGGCCGGCTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGGCATGGGGATTCTCAGAGCGTTTCTCAACCGAAGGAAGTTGAATCTCTTAAGGGTCTATGGGTGAGGTCTGTAGCTTGTGGATCATGGCACACAGCGGCAATTGTTGAAGTCATGGTTGACCGTTTTAGGTATAATACCGGTAAGCTTTTTACTTGGGGTGATGGGGATGAAGGGGTGCTTGGTCACAGTGATAATGGAAGGAAGCCTTTGCCAACTTGTGTAGCTCAACTTTTGGATTATGATTTCGTTAAAGTATCTTGTGGGAGAATGTTGACTGTAGCACTCACTAATATGGGTAAAGTTTTCACAATGGGAAGTGCAATTCATGGACAGCTAGGAAACCCACATGCCAAGGATAAATCAGTGACAATTGTTGAAGGATTGCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGTTCGTATCACGTTGCAGTCTTGACATCGGCTGGGAGTGTCTATACATGGGGAAAGGGTTCAAATGGACAACTAGGATTAGGTGACACCGAAGATAGATATTTGCCGTCTTTTGTGGAGGCTCTAAGGGACCGGCAGGTAGAAAGTATTAGTTGTGGGCCAAGCATCACGGCTGCAATCTGTTTACACAAGCCTATTTCTATTAGTGACCAATCGGCTTGTAGTGGGTGTAAGTTGCCTTTTGGATTTACAAGGAAGAAGCATAACTGCTACAATTGTGGCCTCCTGTTTTGCCATTCATGTAGTAGTAAAAAAGTTACAAATGCATCTCTAGCACCCAATAAGACCAAGGCTTTTCGGGTTTGTGATCAATGCTTCAATAAACAGCTAGGAAGTAAGCATTCAGTTACGGCATCAAAGTCTAGAAATTACAACACTCAGCATCTGTTGAGGAATCAGAATAGCTTTTCCGATCTTGCAGAAGATAGAGGAGAAACAAACATGACACAGGGTCCGTTTCTGTCTCTCAGTCAATCGTGTTACAAAAGAAGCATGCCAGGTGGATCCAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTGGAAAACATTTCTCCTGTGTTTGGTGGAGTGCCACAATGGGGGCAGGTTCCATGCCCTGCCCTGTTTAAAAATTGTACAGAACATTCAGTATCATcgtcaaaaaataaattagaatctaCATTATCCAGTGCCCGTAATGCAGAGAAAGATACGACAGAATCTGATAAGATGCTTATAGAAGAAGTTCAGAGGCTGAGAAATGAGGCTAGAAGCCTTGAAGAGCAATGTGAGATGGGAAACCATAAGATACAAGAATGTCAAAACAAAATTGAGGAGAGTTGGCAATTGGCAAGGGAGGAGGCTGCAAAGAGTAAGGCGGCGAAAGAGGTCATAAAAGCATTGCTACATACCATATCAGGAAAAGCCAATGCTGTACAAGATGGAAAGCTTGGTGTACAGGAATGCCTCTCGAATTTAACACCCATACATACCGATATTCATACTCCAAAGGACGGAAACGTGGACAGTCTATCTAGTTCACCTATAGTATCCTCTGACACATTAAAATCCAAACTGTCAAGAAGTATGTTACTCAAAAGTGATAGATCAAAGCAGGATTCTCCGAAAAATAAAGCAGATTCGCATCAGCAAGACGGCTCAGAAGGCTTGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAAAATTACCATGTGGGCAGAAGGGCCTTAAGCGAGTGAGATTTAGTGTCTTTCTACTCTTAGTTTTGGAACTTAATATGGGCATCTCTAGTCATGATTTATCTTGTGATATGATAACCTCCTTTGTTAAGGTTCTGCCTAATTTTGTGAGAATGGATCCTTTGAGCCGGAAACAATTTTCCGAGAAGGAAGCGGAGCGATGGTGGGAGGAGAATCAAGCCATAGTGTACCAAAAGTATGGGATTGAAGGATGCATAAACACAAGCCAAAACTGGGAGAAGGGCTAA 3276 0.4182 MTMGEESLAAAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQHEKHLRLNAVTKIVQGQGNIKSQKQNQNGKECHSFSLMYANGERSLDLICKDKAQATSWFVGLKAVISQSQHPRPFSSLRSCKGVQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPALSLSERCFSDGLSYAYDSFYSSESFLSNTQSSIDNSVPNSPYIDPDVLKKKGSTYVDPEYQKNLPYRYLVSSTSPRVGINNVLKDVMIWGGGIAGTAGNGNDRFVNQKGIRAVFPKLLESTMTLDVQYIALGEKHAALVTKQGEVLCWGQGKGGRLGHKIDIDVNSPKMIDSLNGIHIKYTACGEYHTCALTDSGEVYAWGDDCCGANLAGEGKFISQWIPHKLSGPLYGISISNVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDSQSVSQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGDEGVLGHSDNGRKPLPTCVAQLLDYDFVKVSCGRMLTVALTNMGKVFTMGSAIHGQLGNPHAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSAGSVYTWGKGSNGQLGLGDTEDRYLPSFVEALRDRQVESISCGPSITAAICLHKPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHSCSSKKVTNASLAPNKTKAFRVCDQCFNKQLGSKHSVTASKSRNYNTQHLLRNQNSFSDLAEDRGETNMTQGPFLSLSQSCYKRSMPGGSKDWKNQQESQQHLENISPVFGGVPQWGQVPCPALFKNCTEHSVSSSKNKLESTLSSARNAEKDTTESDKMLIEEVQRLRNEARSLEEQCEMGNHKIQECQNKIEESWQLAREEAAKSKAAKEVIKALLHTISGKANAVQDGKLGVQECLSNLTPIHTDIHTPKDGNVDSLSSSPIVSSDTLKSKLSRSMLLKSDRSKQDSPKNKADSHQQDGSEGLKVEWVEQYEPGVYITFTKLPCGQKGLKRVRFSVFLLLVLELNMGISSHDLSCDMITSFVKVLPNFVRMDPLSRKQFSEKEAERWWEENQAIVYQKYGIEGCINTSQNWEKG 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 535 586 IPR000408 -
Sto5g1728 1091 MobiDBLite consensus disorder prediction 923 977 - -
Sto5g1728 1091 MobiDBLite consensus disorder prediction 952 977 - -
Sto5g1728 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 353 378 - -
Sto5g1728 1091 SUPERFAMILY FYVE/PHD zinc finger 644 716 IPR011011 -
Sto5g1728 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 587 635 IPR000408 -
Sto5g1728 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 483 531 IPR000408 -
Sto5g1728 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 535 583 IPR000408 -
Sto5g1728 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 483 534 IPR000408 -
Sto5g1728 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1051 1079 - -
Sto5g1728 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 1012 - -
Sto5g1728 1091 Gene3D - 8 124 IPR011993 -
Sto5g1728 1091 SUPERFAMILY PH domain-like 12 117 - -
Sto5g1728 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 460 470 IPR000408 -
Sto5g1728 1091 SMART fyve_4 637 706 IPR000306 GO:0046872
Sto5g1728 1091 Coils Coil 832 866 - -
Sto5g1728 1091 MobiDBLite consensus disorder prediction 928 951 - -
Sto5g1728 1091 SUPERFAMILY RCC1/BLIP-II 257 639 IPR009091 -
Sto5g1728 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 643 705 IPR017455 -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 421 IPR000408 -
Sto5g1728 1091 Gene3D - 478 638 IPR009091 -
Sto5g1728 1091 Gene3D - 243 378 IPR009091 -
Sto5g1728 1091 Gene3D - 379 475 IPR009091 -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Sto5g1728 1091 MobiDBLite consensus disorder prediction 810 830 - -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Sto5g1728 1091 PANTHER F12P19.9 PROTEIN 11 1012 - -
Sto5g1728 1091 PANTHER F12P19.9 PROTEIN 1051 1079 - -
Sto5g1728 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 1052 1076 IPR013591 -
Sto5g1728 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 982 1012 IPR013591 -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 256 314 IPR000408 -
Sto5g1728 1091 CDD PH_PLC_plant-like 10 118 - -
Sto5g1728 1091 Pfam FYVE zinc finger 645 703 IPR000306 GO:0046872
Sto5g1728 1091 CDD FYVE_like_SF 648 701 - -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 257 273 IPR000408 -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 424 438 IPR000408 -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 524 542 IPR000408 -
Sto5g1728 1091 PRINTS Chromosome condensation regulator RCC1 signature 582 603 IPR000408 -
Sto5g1728 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 587 638 IPR000408 -
Sto5g1728 1091 ProSiteProfiles BRX domain profile. 982 1077 IPR013591 -
Sto5g1728 1091 MobiDBLite consensus disorder prediction 810 824 - -
Sto5g1728 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 716 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1728 Sto-Chr5 12435406 12442960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1728 - - adu:107481014 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1728 5 12435406 12442960 Sto5g1728 5 12435406 12442960 ECH