Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0585 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g3728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0588 . . . . . . . . Aev04g3293 . Ahy13g0637 . Aip03g00666 . . . Amo13g0648 . Apr5g0251 . . . . . . . Bva13g00252 Bva14g00326 Car06g03720 . Cca04g00493 . . . Dod03g3082 . . . . . . . Gma11g01132 Gma12g00434 . . . . . . Lal9g0174 . . . . . . . . . . . . . . . . . . . . . Lja3g0569 . Mal7g2460 . . . . . . . Mtr4g2029 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g2776 . . Sto10g0218 Tpr3g2236 . . . Tsu02g02302 . . . . . . . . . . . . .
Vvi3g0589 . . . . . Adu03g00417 . . . . Ahy13g0640 . Aip03g00669 . . . . . . . . Arst3g00554 . . . . Bva13g00249 . Car06g03723 . Cca04g00490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g00705 . Lasa7g01311 . . . . . . . . Lja3g0566 . . . . Mepo2g02250 . . . . . . . Phac11g00757 . Phco9g00571 . . . . . Pste1g02014 . . . . . Pumo11g01742 . Pvu11g0516 . Rops3g00618 . Seca4g03624 . . Ssu3g2779 . . . . . . Trre7g02974 . . . . . Vifa6g00864 . Vimu5g02280 . Viun11g02356 . . Vra2g0461 .
Vvi3g0590 . . . . . . . . Aev04g3296 . . . Aip03g00670 . . . Amo13g0651 . Apr5g0254 . . . . . . . . . Car06g03725 . . . . . Dod03g3085 . . . . . Gma04g00135 . Gma11g01128 . Gso4g0129 . Gso4g0129 . . . Lal9g0173 . . . . . . . . . . . . . . . . . . . . . . . Mal7g2463 . . . . . . . Mtr4g2032 . . . . . . . Psa7g4748 . . . . . . . . . . . . . . . . . . . . Sto10g0220 Tpr3g2238 . . . Tsu02g02306 . . . . . . . . . . . . .
Vvi3g0591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 339 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Lal Lal9g0173 Chr9 1067576 1084224 -
Vvi Vvi3g0583 Chr3 5021172 5021606 +
Vvi Vvi3g0584 Chr3 5025540 5026440 +
Vvi Vvi3g0585 Chr3 5037316 5039213 +
Psa Psa2g3728 Chr2 397894930 397898195 -
Vvi Vvi3g0586 Chr3 5046973 5048883 +
Vvi Vvi3g0587 Chr3 5052307 5052731 +
Vvi Vvi3g0588 Chr3 5052994 5062493 -
Aev Aev04g3293 Chr04 31985493 31986380 -
Ahy Ahy13g0637 Chr13 6636334 6637657 -
Aip Aip03g00666 Chr03 6539989 6541225 -
Amo Amo13g0648 Chr13 8031424 8032973 -
Apr Apr5g0251 Chr5 2233881 2235025 -
Bva Bva13g00252 Chr13 1208566 1209802 +
Bva Bva14g00326 Chr14 1625657 1627084 +
Car Car06g03720 Chr06 68877547 68878428 -
Cca Cca04g00493 Chr04 4867558 4868957 +
Dod Dod03g3082 Chr03 63481828 63483300 -
Gma Gma11g01132 Chr11 9545410 9546798 +
Gma Gma12g00434 Chr12 3561966 3562853 +
Lal Lal9g0174 Chr9 1086452 1087348 +
Lja Lja3g0569 Chr3 5625883 5627271 +
Mal Mal7g2460 Chr7 85330323 85331207 -
Mtr Mtr4g2029 Chr4 33768873 33770171 -
Ssu Ssu3g2776 Chr3 82075782 82076663 -
Sto Sto10g0218 Chr10 1840096 1844893 -
Tpr Tpr3g2236 Chr3 20956394 20957751 -
Tsu Tsu02g02302 Chr02 23294441 23295785 -
Vvi Vvi3g0589 Chr3 5071224 5077680 +
Adu Adu03g00417 Chr03 3830644 3844911 +
Ahy Ahy13g0640 Chr13 6653065 6668473 +
Aip Aip03g00669 Chr03 6555257 6559029 +
Arst Arst3g00554 Chr3 3836452 3851602 +
Bva Bva13g00249 Chr13 1185054 1200847 -
Car Car06g03723 Chr06 68895465 68910948 +
Cca Cca04g00490 Chr04 4829208 4846754 -
Lapu Lapu11g00705 Chr11 10104513 10120742 +
Lasa Lasa7g01311 Chr7 321681261 321704195 -
Lja Lja3g0566 Chr3 5577240 5594284 -
Mepo Mepo2g02250 Chr2 32197337 32214914 +
Phac Phac11g00757 Chr11 4888468 4904893 -
Phco Phco9g00571 Chr9 4119055 4134649 -
Pste Pste1g02014 Chr1 6297277 6317039 -
Pumo Pumo11g01742 Chr11 48993535 49000814 +
Pvu Pvu11g0516 Chr11 4300671 4317219 -
Rops Rops3g00618 Chr3 7695410 7718567 -
Seca Seca4g03624 Chr4 62718489 62736388 -
Ssu Ssu3g2779 Chr3 82091649 82106795 +
Trre Trre7g02974 Chr7 26675050 26693710 -
Vifa Vifa6g00864 Chr6 298659064 298682467 -
Vimu Vimu5g02280 Chr5 33846963 33863472 +
Viun Viun11g02356 Chr11 37592904 37613751 +
Vra Vra2g0461 Chr2 3569797 3585282 -
Vvi Vvi3g0590 Chr3 5084972 5109888 +
Aev Aev04g3296 Chr04 32005383 32019552 +
Aip Aip03g00670 Chr03 6559049 6570126 +
Amo Amo13g0651 Chr13 8048801 8064191 +
Apr Apr5g0254 Chr5 2253770 2269988 +
Car Car06g03725 Chr06 68913972 68914780 -
Dod Dod03g3085 Chr03 63498169 63525814 +
Gma Gma04g00135 Chr04 1152817 1154511 -
Gma Gma11g01128 Chr11 9518132 9533799 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Lal Lal9g0173 Chr9 1067576 1084224 -
Mal Mal7g2463 Chr7 85360034 85379804 +
Mtr Mtr4g2032 Chr4 33802785 33820457 +
Psa Psa7g4748 Chr7 413446919 413467603 +
Sto Sto10g0220 Chr10 1866721 1886381 +
Tpr Tpr3g2238 Chr3 20977121 20994813 +
Tsu Tsu02g02306 Chr02 23328388 23344116 +
Vvi Vvi3g0591 Chr3 5111749 5111955 +
Vvi Vvi3g0592 Chr3 5114410 5114619 +
Car Car06g03720 Chr06 68877547 68878428 -
Cca Cca04g00493 Chr04 4867558 4868957 +
Lal Lal9g0174 Chr9 1086452 1087348 +
Lja Lja3g0569 Chr3 5625883 5627271 +
Mal Mal7g2460 Chr7 85330323 85331207 -
Mtr Mtr4g2029 Chr4 33768873 33770171 -
Ssu Ssu3g2776 Chr3 82075782 82076663 -
Tpr Tpr3g2236 Chr3 20956394 20957751 -
Tsu Tsu02g02302 Chr02 23294441 23295785 -
Gma Gma04g00135 Chr04 1152817 1154511 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Gso Gso4g0129 Chr4 1128968 1134657 -