Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo11g01742 ATGAGTATGGTTGGTCATGTTTTGGGACTGGGCGACAGACATTTGGACAACATTCTTATAGATTTTTGTAATGGGGATATTGTACACATTGATTACAATGTGTGTTTTGATAAGGGACAAAGACTAAAAATTCCAGAGATTGTTCCTTTCCGTCTGACCCAAATGATTGAAGCAGCTTTAGGGCTGACTGGAATAGAGGGTAGCTTCAAATCAAACTGTGAGACAGTTATTGGTGTTCTAAGGAAGAACAAAGACATACTTTTGATGTTATTGGAAGTATTTGTTTGGGATCCACTTGTGGAGTGGACACGTGGTGATTTTCATGATGAAGCTGCAATTGGTGGTGAAGAAAGAAAAGGCATGGAGTTGGCTGTTAGCTTGAGTCTATTTGCATCTCGAGTACAGGAAATTCGTGTTCCCTTACAGGAACACCATGATCAATTATTGACTAGTCTGCCAGCTGTTGAATCTGCACTTGAGAGGTTTGCTGACGTTCTAAACCAATATGAGCTTGCCTCTACTCTATACTATCGAGCTGACCAGGAGAGGTCTAGCCTTATATTGCATGAGACATCTGCAAAGTCGATTGTTGCTGAAGCAACCAGTAATTCAGAGAAAATTCGAGCTTCTTTTGAAATTCAGGCTCGGGAATTTGCCCAAGCAAAGTCTATGGTTGCTGAGAAAGCTCAGGAGGCAATGACTTGGGCTGAGCAGCATGGAAGGATTCTTGATGCTTTACGGTGCAACTTAATCCCAGAAATAAATGCTTCTTTTAAGCTGAATAACATGGAAGCAGCCTTATCTCTTACATCTGCAGTCATCGTAGCAGGGGTTCCACTAACTGTTGTTCCTGAGCCAACACAAGCACAATGCCATGATATAGATAGGGAAGTTTCTCAATTCGTAGCTGAGTTGGGTGATGGACTAACTTCTGCCACAACTTCTTTGCAAGCATACTCCTTGGCTCTGCAAAGAATTCTACCATTAAATTACCTTTCAACCAGTGCAGTTCATAACTGGGCACAAGTTCTACAACTATCTATCAATGCCCTGTCATCAGATATTCTCTCTCTTGCCAGAAGGCAGGCTTCTGAACTTATTGCAAAATTTCATGTAGATAGCATCGATTCTATCAAATGCAGTCATGATGATCTTTGTTTCAGAGTGGAGAAGTATGCAGTAGAAATAGAAAAATTAGAAAAAGAGTGTGCTGAAATAGAGAGTTCTATTGGTTCCGAATCAGAATCAAAAACTAAGGATCGCCTTTTATCTGCTTTCATGAAATTCATGCAGTCCATTGGTCTTTTAAGAAAGGAGGATAGGATGTCTTCTGTTCAATCTAAATATGACGGGATGAACAATGCCAGTCCTTTAGGTGAGCTAGAAGAGGAGAGGGAGAAGGCACTATTAATTCTGAATATTGCTGTGAGTTCACTTTATAATGAGGTTAAGCATAGAATACAAAATATATATAATGATATGTCAGGAGGAAGAAATCAATACAATATGTTGCAGAATGACTCTGGAACTATTTTTGCTGAGTTTGAAGAACAAGTAGAAAAGTGTAATCTTGTGACAGAGTTTGTTAATGATCTATGCCAATTTATTGGAAAGGACATCCCTTCTGTTGATATTAACAAAGTTCTTTCGAAGTTTTCTTCTGAAAGTAATTGGGTTTCCATTTTCAAAACCATTTTGATTTCCTGTAAGGGATTGGTTAGTCAAATGACAGAAGTTGTTCTGCCAAATGTAATACGAGCTGCTGTTTCATTAAATTCAGAGGTTATGGATGCATTTGGATTGATCTCACAAGTTCGAGGGTCTATAGAAACTGCACTGGAGCAGCTTGTGGAGGTTGAAATGGAGAGAGCATCACTAGTTGAACTTGAACAGAATTATTTTGTTAAGGTTGGTCGTATTACTGAGCAGCAGCTGGCTCTTGAAGAAGCTGCAGTTAAGGGCAGAGATCTTCTTTCATGGGAAGAGGCAGAGGAACTTGCATCCCAAGAGGAAGCTTGTAGAGCACAACTGGACCAACTCCATCAAACTTGGAATCAGAGGGATGTAAGGACGACTTCTCTTATAAAGAGAGAAGCTGACATAAAAAATGCCCTGGTTTCTGTGAATTGTCAATTTCAATCTCTAGTTGGTTTGGAAGAAGAAATGGAGCTACATATTTTGAGAAGCAAAGCACTATTGGCTGCACTTGTTAAGCCTTTCTTGGAATTGGAATCCATTGATATTATGCTGTCTTCAGCTGATGGTTCAGTTGCGATGCCTTCAAGTAAATTTCACACACAGCCAGATTTGATAAATTCTGGAAATTCTATATCTGAGAATGTCTGGAAAGTTGGAGGTCTATTGGATAACCATTCATTCTTTATTTGGAAAATAGGCGTCATAGATTCTTTTCTTGATGCATGCATACATGATGTAGCTTCATCAGTTGAGCAAAATCTAGGCTTTGACCAATCACTCAATTTTATGAAGAAAAAGCTTGAAATCCAACTTCAGAAACACATTGGTCACTATTTGAAAGAAAGAGTTGCTCCTAGTTTACTGACTTGTTTAGATAAAGAAAATGAGCACTTGAAGCAACTTACAGAGTCATCAAAGGAACTTGCTTTAGACCAGGTGAAAAAGGATGGGGCTGTGAAAAAGGTTTTACTTATGCTTGAAGAATATTGTAATGCACATGAAACTGCTAGAGCAGCAAAATCAGCAGCTTCTGTCATGAAAAAACAAGTGAATGAGTTGAAAGAAGCTCTTCGAAAAACTGCCCTTGAGATAGTTCAGATGGAATGGATGCATGATGTTAGTTTGAACCCATCATATAACAGAAGAATCAGATTTGAGAAGTATCTTGGTACTGATGACAGCTTGTATACAATCATTTTAAACCTCAGCAGATCTAAATTACTGGACAATATACAATCTGCCATGTCAAAAATCACAACATCAATGGAGTGTCTTCAGTCTTGTGAACGAAGTTCTCTTATAGCGGAAGGACAGCTTGAGAGAGCAATGGCTTGGGCTTGTGGGGGTCCCAATTCCAGTAGTTCTGGAAATACTTCAACTAAAAATTCAGGAATTCCTCCTGAGTTCCATGAACATATTAAGACTCGGAGGCAGATTTTATGGGAATCTAGAGAAAAGGCATCTGACATTGTGAAGTTATGTGTGTCAGTGTTAGAGTTTGAAGCATCAAGAGATGGGTATTTGCTTATACCAGGCCAACCATATCCCTTCAGGAGTAGTGTTGATGGCAAGACATGGCAGCAAGTGTACTTGAATGCATTAACAAGATTGGATGTTACTTTCCATTCTTATACACGTACTGAACAAGAATGGAAGCTTGCACAATGCACTATTGAAGCTGCTTCCAATGGATTATATACTGCAACCAATGAGCTCTGCATTGCCTCTCTAAAAGCAAAGTCAGCTTCAGGTGATTTACAAAGCACGGTTCTTTCAATGAGGGATTGTGCATATGAGGCTAGTGTTGCACTGTCTGCTTTTGCTCGGGTTTCAAGGATCCATACTGCTCTAACTTCTGAAAGTGGTTCTATGCTTGAAGAGGTTCTAGCAATAACTGAAGATATACATGATGTTTACAATCTGGGGAAAGAGGCAGCTGCTATCCACCTTTCTCTTATGGAATGCCTTTCAAAGGCAAATGCCATCCTTTTTCCACTTGAATCGGTGTTGTCTAAGGATGTAGCTGCTATGGCCGATGCTATAGCTAGGGAAAGTGAGACCAAGAAGGAAATATCACACATCCATGGACAAGCTATATATCAGTCATATTGTTTAAGAATCAGGGAGGCTTGTCATACCTTTAAGCCCTTGGTACCCTCTCTGACATCAGCTGTGAAGGGACTTTATTCATTGTTGACTAGGCTAGCAAGAACTGCTAATATCCATGCTGGCAATCTGCACAAAGCTCTTGAAGGAATAGGAGAAAGTCAGGAAGTAAAATCAGAGGATATTAATTTGTCAAGATCAGATGCTGGTGGTGGTGATGCAGTTGAATTTGATGGTAAAGAAGGGGAGAGTCTCTCTACGTCTGAAGATGATAAGACTGATGATTTTATTGGCTTTTCTCGACTTTCTTTGGAAGACAAGGGATGGGTATCACCACCAGATAGCATCTACTGTAGTAGCTCGGGATCTGACATCACATCAGCTGAAGTTAGTCTTCCTGATAGCTTGAATGATTCAGCTGGAAATAAAGGCCTGCTTTCACAGGGGTCTGGTAGCAGAAACCCCACAGGTCATACGCATACCACTCTATTGTCTCAAACTGATGTGGAAGAAATCTCACCTTTTGAGTTGTCAGAATCTTCACCTGTGGAAACTGATCTTAATGGTGCTGGTTCTGTGAAGTCAAGTAATGAGGCCACTGAGCATCCAGAAGCTGTAGCTTTACCAGGTGATGAATCTGTTGCCATCCCTGCCAACTCCCAAAATCCATCGAATGAAAACCTAGGCAAATTTGATGGTGAAGATGAACTGCTTTCTGCAAAAGAAGTTAAAAATGCTGCTGAACATCATGAAGCTCCTGATCCCAACATAAATGCCAATACCCGTGTGGGAAGGGGTAAAAATGCTTATGCCTTATCAGTATTGAGGCGGGTTGAGTTGAAAATTGATGGTCGAGATATCTCTGAAAGCAGAGAAGTTGGTACTGCGGAGCAAGTAGATTATCTACTAAAGCAAGCTACTAGTGTAGATAATCTATGCAACATGTATGAAGGTTGGACACCATGGATTTGA 4776 0.401 MSMVGHVLGLGDRHLDNILIDFCNGDIVHIDYNVCFDKGQRLKIPEIVPFRLTQMIEAALGLTGIEGSFKSNCETVIGVLRKNKDILLMLLEVFVWDPLVEWTRGDFHDEAAIGGEERKGMELAVSLSLFASRVQEIRVPLQEHHDQLLTSLPAVESALERFADVLNQYELASTLYYRADQERSSLILHETSAKSIVAEATSNSEKIRASFEIQAREFAQAKSMVAEKAQEAMTWAEQHGRILDALRCNLIPEINASFKLNNMEAALSLTSAVIVAGVPLTVVPEPTQAQCHDIDREVSQFVAELGDGLTSATTSLQAYSLALQRILPLNYLSTSAVHNWAQVLQLSINALSSDILSLARRQASELIAKFHVDSIDSIKCSHDDLCFRVEKYAVEIEKLEKECAEIESSIGSESESKTKDRLLSAFMKFMQSIGLLRKEDRMSSVQSKYDGMNNASPLGELEEEREKALLILNIAVSSLYNEVKHRIQNIYNDMSGGRNQYNMLQNDSGTIFAEFEEQVEKCNLVTEFVNDLCQFIGKDIPSVDINKVLSKFSSESNWVSIFKTILISCKGLVSQMTEVVLPNVIRAAVSLNSEVMDAFGLISQVRGSIETALEQLVEVEMERASLVELEQNYFVKVGRITEQQLALEEAAVKGRDLLSWEEAEELASQEEACRAQLDQLHQTWNQRDVRTTSLIKREADIKNALVSVNCQFQSLVGLEEEMELHILRSKALLAALVKPFLELESIDIMLSSADGSVAMPSSKFHTQPDLINSGNSISENVWKVGGLLDNHSFFIWKIGVIDSFLDACIHDVASSVEQNLGFDQSLNFMKKKLEIQLQKHIGHYLKERVAPSLLTCLDKENEHLKQLTESSKELALDQVKKDGAVKKVLLMLEEYCNAHETARAAKSAASVMKKQVNELKEALRKTALEIVQMEWMHDVSLNPSYNRRIRFEKYLGTDDSLYTIILNLSRSKLLDNIQSAMSKITTSMECLQSCERSSLIAEGQLERAMAWACGGPNSSSSGNTSTKNSGIPPEFHEHIKTRRQILWESREKASDIVKLCVSVLEFEASRDGYLLIPGQPYPFRSSVDGKTWQQVYLNALTRLDVTFHSYTRTEQEWKLAQCTIEAASNGLYTATNELCIASLKAKSASGDLQSTVLSMRDCAYEASVALSAFARVSRIHTALTSESGSMLEEVLAITEDIHDVYNLGKEAAAIHLSLMECLSKANAILFPLESVLSKDVAAMADAIARESETKKEISHIHGQAIYQSYCLRIREACHTFKPLVPSLTSAVKGLYSLLTRLARTANIHAGNLHKALEGIGESQEVKSEDINLSRSDAGGGDAVEFDGKEGESLSTSEDDKTDDFIGFSRLSLEDKGWVSPPDSIYCSSSGSDITSAEVSLPDSLNDSAGNKGLLSQGSGSRNPTGHTHTTLLSQTDVEEISPFELSESSPVETDLNGAGSVKSSNEATEHPEAVALPGDESVAIPANSQNPSNENLGKFDGEDELLSAKEVKNAAEHHEAPDPNINANTRVGRGKNAYALSVLRRVELKIDGRDISESREVGTAEQVDYLLKQATSVDNLCNMYEGWTPWI 1591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo11g01742 1591 FunFam serine/threonine-protein kinase SMG1 isoform X1 1 136 - -
Pumo11g01742 1591 Coils Coil 857 877 - -
Pumo11g01742 1591 ProSiteProfiles FATC domain profile. 1559 1591 IPR003152 GO:0005515
Pumo11g01742 1591 SUPERFAMILY Protein kinase-like (PK-like) 1 106 IPR011009 -
Pumo11g01742 1591 Coils Coil 902 929 - -
Pumo11g01742 1591 Pfam Phosphatidylinositol 3- and 4-kinase 1 103 IPR000403 -
Pumo11g01742 1591 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 1 142 IPR000403 -
Pumo11g01742 1591 Coils Coil 389 416 - -
Pumo11g01742 1591 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 1526 1590 - -
Pumo11g01742 1591 Coils Coil 609 629 - -
Pumo11g01742 1591 Gene3D - 1 122 IPR036940 -
Pumo11g01742 1591 Pfam FATC domain 1563 1590 IPR003152 GO:0005515
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1388 1467 - -
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1015 1031 - -
Pumo11g01742 1591 Coils Coil 663 683 - -
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1323 1360 - -
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1388 1470 - -
Pumo11g01742 1591 SMART pi3k_hr1_6 1 158 IPR000403 -
Pumo11g01742 1591 SMART FATC_2 1559 1591 IPR003152 GO:0005515
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1341 1360 - -
Pumo11g01742 1591 MobiDBLite consensus disorder prediction 1015 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo11g01742 Pumo-Chr11 48993535 49000814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo11g01742 2 113 Acyl Lipid Metabolism Gene Families AT1G60490 30.769 5.65e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo11g01742 K08873 - gmx:100808763 2897.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo11g01742 11 48993535 49000814 Pumo11g01742 11 48993535 49000814 ECH