Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0590 ATGGGTGTTGACCTGAGTAAGCTTTACCCAAGACTAATTCAGGATGTTCAGCTCATGATCAATGAACTAGAAAATGTAACTGTTCTTTGGGAGGAGCTATGGCTCAGCACACTTCAAGATCTTCACTCAGATGTGATGAGGCGCATAAATTTGCTGAAAGAGGAAGCTGCACGAATTGCAGAAAATGTCACTCTTAGCCAGGGTGAGAAGAACAAAATAAATGCTGCAAAATACTCTGCCATGATGGCTCCAGTTGTTGTGGCCTTGGAACGTCGTCTAGCTTCAACTTCTCGGAAACCTGAAACCCCTCATGAGATATGGTTCCATGAGGAGTACAGAGAACAACTCAAATCAGCCATCTTAACCTTTAAAACTCCTCCAGCATCTAGTGCTGCACTTGGAGATGTGTGGCGACCATTTGATAATATTGCTGCATCCTTGTCATCTTACCAAAGGAAGTCATCAATTTCCTTGGGAGAAGTTGCACCACAATTGGCTCTGTTATCATCTTCTGATGTTCCAATGCCTGGTCTTGAGAGGCAAATCATAGCATCTGAATCTGATCGAGGCCTCACTGCTACTCTCCAGGGAATTGTCACAATTGCTTCTTTCTCTGAGCAGGTGGCTATCTTATCCACCAAAACAAAGCCTAAAAAAATTGTTATACTGGGCTCAGATGGTCACAAGTACACATATCTCTTGAAAGGGCGAGAAGATCTGCGTCTTGATGCCAGAATCATGCAGCTGCTGCAAGCGTTTAATGGTTTTCTGCGTTCATCTCCTGAAACTCGTAGTCATTCTCTTGTCATTCGCTACTATTCCGTGACACCAATTAGTGGTCGGGCTGGACTTATCCAGTGGGTGGACAATGTGATAAGTATTTATAGTATCTTTAAGTCTTGGCAGAATCGTGCCCAGCTGGCACATCTCTCTTCTTTAGGTGCTGGTAATACAAAAAATTCAGTTCCCCCACCTGTTCCCCGGCCAAGTGACATGTTCTATGGTAAAATTATACCAGCACTGAAAGAGAAAGGTATAAGAAGAGTAATTTCACGAAGAGACTGGCCTCACGAAGTGAAGAGAAAGGTTCTTCTGGATCTCATGAAGGAGGCTCCTAGGCAGCTTCTTCATCAAGAACTTTGGTGCGCTAGTGAAGGATTCAAAGCTTTCAGCTTAAAATTGAAGAGGTATTCTGGAAGTGTAGCAGCCATGAGTATGGTTGGCCACATTCTGGGCCTGGGTGATAGACATTTGGATAACATTCTTATGGATTTCTTTACTGGGGATATTGTACATATTGATTACAATGTGTGCTTCGATAAGGGGCAAAGGTTAAAGATTCCAGAGATTGTTCCCTTCCGTCTTACCCAGATGATTGAAACAGCTTTAGGGCTGACTGGAATTGAAGGCACCTTCAGAGCAAACTGTGAAGCAGTTGTTGGTGTTCTGAGGAAGAATAAAGATATACTCTTAATGTTATTAGAGGTATTTGTTTGGGATCCACTTGTAGAATGGACACGGGGAGATTTTCATGATGATGCAGCAATTGGTGGTGAGGAAAGAAAGGGAATGGAGTTGGCGGTTAGTTTAAGTTTATTTGCATCTCGAGTGCAAGAAATCCGGGTTCCTTTACAGGAACATCATGATCTTTTATTGGCTACCTTACCAGCTGTTGAATCTGCTCTTGAGAGGTTTTCAGACATTCTAAACAAATACGAGCTTGTTTCTGCTCTTTTTTATCGTGCTGACCAAGAGAGATCAAACCTTATTCTGCATGAGACATCTGCAAAGTCAATTGTTGCTGAGGCAACTTGTAATTCAGAGAAAACTCGTGCATCATTTGAAATACAGGCACGTGAGTTTGCTCAAGCAAAGGCTGTGGTAGCTGAGATGGCTCAAGAAGCAACTACTTGGATGGAGCAACATGGAAGGATTCTTGAGGCTTTACGAAGCAGTTTGATACCAGAAATCAAAGCATGCATAAACCTGAGTAGTATGCAAGATGCTTTATCTCTTACATCTGCTGTATTAGTGGCAGGGGTTCCATTGACCATTGTTCCTGAGCCCACTCAAGCACAATGCCATGATATAGATAGGGAAGTTTCTCAGCTCATAGCTGAGTTGGATCATGGACTCTCTTGTTCTGTGACAGCCCTCCAAGCATATTCTTTGGCTTTGCAAAGAATCCTACCATTAAATTACCTCACGACAAGCCCACTACATGGCTGGGCACAGGTTCTGCAACTGTCTTCAAGTACCCTTTCTTCTGATATCCTCTCCATTACTATAAGACAGGCTGCTGAACTTGTTGCGAAGGTAAATGGGGATGATTTTGATTCTATTAAATGCGATCATGATGACCTTTGTCTTAAGGTGGAGAAATATGCTGTAGAGATAGAGAAAGTTGAAGAAGAGTGTGCTGAACTGGTAAACTCCATTGGTTCAGAGACTGAATCAAAAGCCAAGGATCGCCTTCTATCTGCCTTCATGAAATACATGCAGTCTGCTGGTCTTGCAAGGAAGGAAGATACCATCTCTTCTGTGCAATTAGGACAATTTAAACATGATGGTACAAAGGAGGCCAGATTTCAAGGAGCACTTGAAGAGAAGAAGGACAAGGTGTTATATATTTTGAGTATAGCTGTAAGCTCTCTGTATGATGAGGTTAAGCATAGGGTTCTGGGCATTTTTACTAATTTGGCTGAAAGAAGCAGTGCAGATAACTGGTTGCAGTCTGATTTTGGAACTATTTTCTGCAAATTTGAAGAGCAAGTAGAGAAATGCATACTTGTAGCAGGATTTGCTAATGAATTGCAGCAAGTAATCAATGGGGATATGCCTACTGTTCGTACAGATATAGAACATTCAAGATATTATTCAGAAAGGAACTGGGCTTCCATTTTTAGAACAAGTTTACTTTCCTGTAAGGGCTTGGTGGGGAAAATGACTGAAGATATTTTACCAGATGTAATTAAATCCATTGTTTCATTTAACTCGGAAGTAATGGATGCATTTGGATCCCTCTCACAAATCCGGGGTTCTATTGATATGGCACTGGAACAGCTTGTTGAGGTTGAAATCGAGAGAGCTTCTTTAGTAGAACTGGAGCAGAATTACTTTCTCAAGGTTGGTGTCATTACTGAGCAACAATTGGCTCTTGAAGAGGCTGCTTTGAAGGGTAGGGATCATCTTTCTTGGGAAGAGGCAGAAGAGCTAGCTTCCCAAGAAGAAGCTTGTAGGGCACAGCTGGACCAACTCCATCAAACATGGAATCAGAAGGACAAGAGGACTTCTTCTCTGATTAAGAAGGAAGCTGTTATTAAAAATGCCTTGGTTTCTTCAAAACGCCTATTTCAATCTCTTATTATTGATGGTGAGGAAAGGGAGCCTCAAGGTAGGGGTGGCAAAGGTCTATTGGCAAAACTAGTTAAGCCCTTCTCTGAGTTAGAATCAATTGATAAAGCGCTCTCTTCATTTGGTGGTTCTGTTGCTTTCTACTCAAGGGCAATTCCTAATCCTGCAGATTTGATGAGTTCTGCATATCCAATGTCTGAATATATCTGGAAGTTTGACAGCTTGCTGAACAGCCATACTTTCTTTGTTTGGGAAATTGGTGTTATGGATTCTTTTCTTGATTCATGCATACATGATGTAACTTCATCTGTAGATCAAAGTTTAGGATTCGACCAGCTCTTCAATGTTATCAAGAAAAAACTTGAAATCCAACTTCAAGAACATATTGTTCAGTACCTTAAAGAGCGTGTAGCTCCTATTCTATTGGCTTTGTTAGATAAAGAAAAGGAGCATTTGAAGCAATTGACAGAGGCAACAAAGGAACTTGCTTTTGATCAAGGGAAAAAAGATCTTGGGGCTGTGAAAAAGGTGCAACTCATGCTTGAGGAATACTGCAATGCACATGAAACTGCCAGTGCAGCAAGATCAGCAGCTTCTCTTATGAAAAGGCAGGTGAATGAGCTTCGGGAGGCTGTTCTCAAGACTAGCCTAGAGATTGTTCAGATGGAGTGGATGCACGATGTTTCGTTGACCTCATCACATAATAACAGGGTCATATGGCAGAAGTTTATTGCAAATGATGATAGCTTGTATCCCATTATCCTGAACCTAAACAGACCCAAATTATTGGAAAGTATGCAATCTGCTGTATCAAAAATAGCTAGGTCAGTGGAATTCCTGCAAGCCTGTGAAAGAACTTCCATAACAGCAGAAGGACAGCTTGAGAGAGCCATGGGATGGGCCTGTGGTGGCCCAAATTCAAGTGCAACTGGAAACACCTCAACTAAGAGTTCTGGAATTCCTCCTGAATTCAATGATCACCTTACGAGGCGAAGACAATTATTATGGGAAGTTCGAGAAAAGGCATCCGATATGATCAAAATTTGTGTATCAGTATTGGAGTTTGAAGCATCAAGAGATGGCATCTTTCGGATTCCTGGTGGTGATGGCAGGACATGGCAGCAAGCTTACTTCAATGCACTAACAAGACTAGATGTCACTTATCATTCATTTACACGTACTGAGCAAGAATGGAAACTTGCACAAAGCAGTGTGGAAGCTGCTTCAAATGGCTTGTATACTGCAACTAATGAACTCTGCATTGCTTCTGTTAAAGCAAAGTCGGCATCAGCTGATTTACAAAGCACTGTTCTTGCAATGAGGGATTGTGCCTATGAAGCCAGTGTTGCTCTCTCTGCTTTTAGTCGTGTTACGAGGGGCCATACTGCTTTGACTTCTGAATGCGGTTCCATGCTTGAAGAGGTTCTGGTAATTACTGAAGGTCTCCATGATGTTCATAGTTTAGGAAAGGAGGCTGCTGCAGTACACCATTCTCTCATGGAAGATCTTTCAAAGGCAAATATGGTCCTTCTTCCACTTGAATCAGTGTTGTCTAAGGATGTAGCAGCTATGACTGATGCTATGACTCGAGAAAGAGAGACCAAGTTGGAAATATCCCCCATTCATGGTCAAGCCATTTACCAGTCCTATTGTTTAAGGATTAGAGAGGCTTGTCCGGCCTTTAAGCCCTTGGTACCATCACTTACATTCTCTGTGAAGGGACTCTATTCCATGTTAACCAGGCTGGCACGAACTGCAAGTCTACATGCTGGGAATCTTCATAAAGCGCTTGAAGGACTAGGAGAAAGCCAAGAAGTTAGGTCCCAAGAAATTAATTTGTCAAGGACAAACCTCGCAAGTGATGCCTCTCAATCCGGTAACAAAGACAGAGAGATCTTCTCCAGATCTGATGAGGGAAATGCTGAGGATTTGCTTGGTGTAGCTGGATTGTCCTTGCAAGATAAAGGCTGGATATCCCCACCAGATAGTGTCTATAGTAGCAGCTCAGAATCTGTCATCATCTCAGATGAAGCAAGTCTTCCAGATAGCCACACTGCTCCAGCAGAAATGATGGCACGGCTCTCATATGGGTCTAATAGCAGAGAGGGCACAGATTACTTGAACTCTGTTTCATCTTCTGGGACTGATTTCCAAGAAATCTCATTGAATTGTGGGCAGTCAGAGTCTAAGTACACGGAGTACAATAACAGCGATGCTAGTTCTGTCAAATCTCCAACTAATGAGCCAAGTGAACATCTGAAAGCTGCGGCATCACCAAAGAATGAATCCATAACTGTCATTGACACTTCCAAGTCTTTGAATGAGGAAGACTTTGAGGGTAAAGATGAAACATCCTCATCAAATCAAGTTAAGATTGAAGATGAAAATCGGGAGGCCCGACTTCCTAATACAGATGCTGGCAGCCGAATAGCCCGAGGTAAAAATGCCTATGCAATTTCAGTTCTAAGGCGAGTTGAGATGAAACTAGATGGCCGAGATATTGCTGACAACAGAGAAATTAGTATTGCAGAGCAAGTGGATTATTTACTTAAGCAAGCCACAAGTATAGATAATCTCTGCAACATGTATGAAGGTTGGACGCCCTGGATTTGA 5967 0.4222 MGVDLSKLYPRLIQDVQLMINELENVTVLWEELWLSTLQDLHSDVMRRINLLKEEAARIAENVTLSQGEKNKINAAKYSAMMAPVVVALERRLASTSRKPETPHEIWFHEEYREQLKSAILTFKTPPASSAALGDVWRPFDNIAASLSSYQRKSSISLGEVAPQLALLSSSDVPMPGLERQIIASESDRGLTATLQGIVTIASFSEQVAILSTKTKPKKIVILGSDGHKYTYLLKGREDLRLDARIMQLLQAFNGFLRSSPETRSHSLVIRYYSVTPISGRAGLIQWVDNVISIYSIFKSWQNRAQLAHLSSLGAGNTKNSVPPPVPRPSDMFYGKIIPALKEKGIRRVISRRDWPHEVKRKVLLDLMKEAPRQLLHQELWCASEGFKAFSLKLKRYSGSVAAMSMVGHILGLGDRHLDNILMDFFTGDIVHIDYNVCFDKGQRLKIPEIVPFRLTQMIETALGLTGIEGTFRANCEAVVGVLRKNKDILLMLLEVFVWDPLVEWTRGDFHDDAAIGGEERKGMELAVSLSLFASRVQEIRVPLQEHHDLLLATLPAVESALERFSDILNKYELVSALFYRADQERSNLILHETSAKSIVAEATCNSEKTRASFEIQAREFAQAKAVVAEMAQEATTWMEQHGRILEALRSSLIPEIKACINLSSMQDALSLTSAVLVAGVPLTIVPEPTQAQCHDIDREVSQLIAELDHGLSCSVTALQAYSLALQRILPLNYLTTSPLHGWAQVLQLSSSTLSSDILSITIRQAAELVAKVNGDDFDSIKCDHDDLCLKVEKYAVEIEKVEEECAELVNSIGSETESKAKDRLLSAFMKYMQSAGLARKEDTISSVQLGQFKHDGTKEARFQGALEEKKDKVLYILSIAVSSLYDEVKHRVLGIFTNLAERSSADNWLQSDFGTIFCKFEEQVEKCILVAGFANELQQVINGDMPTVRTDIEHSRYYSERNWASIFRTSLLSCKGLVGKMTEDILPDVIKSIVSFNSEVMDAFGSLSQIRGSIDMALEQLVEVEIERASLVELEQNYFLKVGVITEQQLALEEAALKGRDHLSWEEAEELASQEEACRAQLDQLHQTWNQKDKRTSSLIKKEAVIKNALVSSKRLFQSLIIDGEEREPQGRGGKGLLAKLVKPFSELESIDKALSSFGGSVAFYSRAIPNPADLMSSAYPMSEYIWKFDSLLNSHTFFVWEIGVMDSFLDSCIHDVTSSVDQSLGFDQLFNVIKKKLEIQLQEHIVQYLKERVAPILLALLDKEKEHLKQLTEATKELAFDQGKKDLGAVKKVQLMLEEYCNAHETASAARSAASLMKRQVNELREAVLKTSLEIVQMEWMHDVSLTSSHNNRVIWQKFIANDDSLYPIILNLNRPKLLESMQSAVSKIARSVEFLQACERTSITAEGQLERAMGWACGGPNSSATGNTSTKSSGIPPEFNDHLTRRRQLLWEVREKASDMIKICVSVLEFEASRDGIFRIPGGDGRTWQQAYFNALTRLDVTYHSFTRTEQEWKLAQSSVEAASNGLYTATNELCIASVKAKSASADLQSTVLAMRDCAYEASVALSAFSRVTRGHTALTSECGSMLEEVLVITEGLHDVHSLGKEAAAVHHSLMEDLSKANMVLLPLESVLSKDVAAMTDAMTRERETKLEISPIHGQAIYQSYCLRIREACPAFKPLVPSLTFSVKGLYSMLTRLARTASLHAGNLHKALEGLGESQEVRSQEINLSRTNLASDASQSGNKDREIFSRSDEGNAEDLLGVAGLSLQDKGWISPPDSVYSSSSESVIISDEASLPDSHTAPAEMMARLSYGSNSREGTDYLNSVSSSGTDFQEISLNCGQSESKYTEYNNSDASSVKSPTNEPSEHLKAAASPKNESITVIDTSKSLNEEDFEGKDETSSSNQVKIEDENREARLPNTDAGSRIARGKNAYAISVLRRVEMKLDGRDIADNREISIAEQVDYLLKQATSIDNLCNMYEGWTPWI* 1989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0590 1988 Pfam Phosphatidylinositol 3- and 4-kinase 230 506 IPR000403 -
Vvi3g0590 1988 SMART FATC_2 1956 1988 IPR003152 GO:0005515
Vvi3g0590 1988 CDD PIKKc_SMG1 201 507 IPR039414 GO:0000184|GO:0004674
Vvi3g0590 1988 MobiDBLite consensus disorder prediction 1849 1923 - -
Vvi3g0590 1988 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 204 545 IPR000403 -
Vvi3g0590 1988 MobiDBLite consensus disorder prediction 1849 1866 - -
Vvi3g0590 1988 Gene3D - 369 531 IPR036940 -
Vvi3g0590 1988 SMART Rapamycin_bind_3 22 143 - -
Vvi3g0590 1988 MobiDBLite consensus disorder prediction 1890 1920 - -
Vvi3g0590 1988 FunFam Serine/threonine-protein kinase SMG1 153 288 - -
Vvi3g0590 1988 SMART pi3k_hr1_6 231 568 IPR000403 -
Vvi3g0590 1988 SUPERFAMILY Protein kinase-like (PK-like) 197 509 IPR011009 -
Vvi3g0590 1988 ProSiteProfiles FATC domain profile. 1956 1988 IPR003152 GO:0005515
Vvi3g0590 1988 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 1923 1987 - -
Vvi3g0590 1988 Gene3D - 167 288 - -
Vvi3g0590 1988 Coils Coil 785 812 - -
Vvi3g0590 1988 Coils Coil 1069 1089 - -
Vvi3g0590 1988 Pfam FATC domain 1959 1987 IPR003152 GO:0005515
Vvi3g0590 1988 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 400 420 IPR018936 GO:0016301
Vvi3g0590 1988 FunFam serine/threonine-protein kinase SMG1 isoform X1 367 539 - -
Vvi3g0590 1988 MobiDBLite consensus disorder prediction 1732 1754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0590 Vvi-Chr3 5084972 5109888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0590 394 496 Acyl Lipid Metabolism Gene Families AT1G60490 29.907 5.78e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0590 K08873 - vvi:100260579 3796.9