Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01449 ATGCCCGCTCAGAAACGTTCCTTCCCCGATTCTCCTCAAGATCACCACCGTCACACCAAACACCACCACCAAGAAACAATCGAAGAAGAAGAAGCTCAACAAGAAGAAGAGGATAATTACGAATCAAACGGTTCAGGATTTTTTATATTCCCCTTCCTTTCTTATAGATTCTTCTATTTTCTTCTTCTTATCGTGTCTTCATTCTCTTCTCAGATTCTCACCGTCCTCCGTCCTCAGCCTCCGAAGACAATTCCGATTTTGATCCAGTTCGTGTTGTTCGAGCTAAGAAGGCCTTCTGTTTCCAAATTCCTCCGATTTGATTCATTCGTATTTTTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACTGTTATGGAATGCTTGCATCGGTTTTGCAGGGAATGCATTGACAAGTCGATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCTCTAATTGCAGCTTTATATCCAGACATCGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGAGACACCTAGTTCATTTGTAACAAGATCACAGCGCAATCAACGCAATGTTCTTTCTAGGAGACAAAACCAAGTAATTGATAATCAAGGATCTGAAGATAATGAAGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAAATTAGGCACAGAAGGCGAAAGAGGCGGACCAGAGTTCGTCCTTCTCAGCCATCGTCATCCACAGCAAGTCCTGATGGTGGATGCATGGAAAGTGATGTGGATATAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACATCAAAAGCTAACTTGGGGAAGAGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGTAGTGGCAATGGTATCAATAGCAAAACTGCCCGCAGTAGCCGCTTGGCTAAGTTAGTTGATTATCTCCGTAACTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAATTTTGTCCGTGAAGCACCTTTGTGAGTATGTTGCTCTACAGACATCTTTGCCAGTTGAAGAAGTTGAGATACTGGCAGTTAAAGGATGCTACAGTACAGTTTGTGACAAGTCATTTGATGAGATTTCATCCTTTGATGAGCTAACAGCGCTGATTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGCATGAATCTTTGGCAGAACTTAAATCCAAATGCATATCTCAAAGGGCGCATTTGATTCTGGCATACAGGCGGAAGGAGTGA 1506 0.427 MPAQKRSFPDSPQDHHRHTKHHHQETIEEEEAQQEEEDNYESNGSGFFIFPFLSYRFFYFLLLIVSSFSSQILTVLRPQPPKTIPILIQFVLFELRRPSVSKFLRFDSFVFLELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRETPSSFVTRSQRNQRNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTEIRHRRRKRRTRVRPSQPSSSTASPDGGCMESDVDIRENRGISSRPLSKHQKLTWGRGGFRSHTRHGSGSGNGINSKTARSSRLAKLVDYLRNLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPILSVKHLCEYVALQTSLPVEEVEILAVKGCYSTVCDKSFDEISSFDELTALIIDPSKDELETLQGHESLAELKSKCISQRAHLILAYRRKE 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01449 501 ProSiteProfiles Zinc finger RING-type profile. 123 163 IPR001841 -
Phco9g01449 501 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Phco9g01449 501 PANTHER OS11G0578200 PROTEIN 13 500 IPR044592 -
Phco9g01449 501 SUPERFAMILY RING/U-box 114 194 - -
Phco9g01449 501 MobiDBLite consensus disorder prediction 236 259 - -
Phco9g01449 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 186 IPR013083 -
Phco9g01449 501 CDD RING-HC_RING1-like 120 185 - -
Phco9g01449 501 MobiDBLite consensus disorder prediction 9 29 - -
Phco9g01449 501 MobiDBLite consensus disorder prediction 1 36 - -
Phco9g01449 501 Coils Coil 192 212 - -
Phco9g01449 501 Coils Coil 23 43 - -
Phco9g01449 501 MobiDBLite consensus disorder prediction 221 361 - -
Phco9g01449 501 Pfam Zinc finger, C3HC4 type (RING finger) 122 162 - -
Phco9g01449 501 MobiDBLite consensus disorder prediction 314 328 - -
Phco9g01449 501 SMART ring_2 123 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01449 Phco-Chr9 33544778 33550600 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01449 9 33544778 33550600 Phco9g01449 9 33544778 33550600 ECH