Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0183 ATGTTCTCCTCCAATGCATGCTCTTTCATGTGCAAGTCGGGCGTAGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACAGAGGAGGCGTTCTGCTCCATCGAGAGTGACGTGTTGCGCTCCAACTTCGAGCAGCGGCAAAACTCACGGCGGCTTTGTGATGGATAAAGAGGCAAATGGGACTCCCACGGCGGTCGGCGAAACCCCAACCTCTGGGGGCGGCGTCCGGGACGTGTACGGCGAAGATAAGGCCACGGAGGATCAGTGTGTGACTCCATGGAGTGTCTCTGTTTCCAGTGGGTATACTTTGATTAGAGATCCACACTTCAACAAGGGACTCGCCTTCACTGAAGAAGAGAGGGACGCACACTTCCTGCGTGGCCTTCTTCCCCCATCTGTTATTTCTCAAGAAACTCAGGTAAAAAAAATGATCCAACACATACGCCAGTATCAAGTTCCATTGCAGAAGTATGTGGCAATGATGGATCTTCAGGAGAGAAATGAAAGATTGTTCTACAAGCTTCTGCTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGTGAAGCATGCCAGAAATATGGGAGTATCTTCATGCAACCTCAGGGACTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTTCTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGGGAATGGGAATACCGGTAGGAAAACTTTCTCTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCATGCCTACCTATTACCATCGATGTGGGTACAAACAATGAAAAATTGTTGAATGAAGAATTATATATAGGGCTCAAGCATAAACGAGTAACTGGGCAGGAATATGCTGAACTTCTGCATGAATTTATGAATGCAGTCAAGCAGATTTATGGTGAAAAAGTCCTTGTTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTTCTCTACTTGAAAAATATAGGTCAACACATCTTGTTTTCAATGATGATATTCAGGGAACAGCATCAGTTGTTCTTGCAGGAGTAGTTTCAGCTCTGAAATTGGTTGGGGGAAACTTGACTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCTGAACTCCTAGCACTTGAAACTTCAAAACGGACAAATGTCCCAGTAGAAGAATTGCGCAAGAACATTTGGTTGGTGGACTCACAGGGTTTGATCGTGAAATCCCGGGAAGACTCACTTCAACATTTCAAGAGACCGTGGGCTCATGAACATGAACCTGTTAAGGAATTAGTAGATGCTATTAATAAAATTAAACCAACGGTTTTAATCGGAACATCAGGACAAGGGAGAGCTTTTACCAAGGAAGTGATTGAAGCTATGGCTTCCATCAATGAGAAACCTATTATTCTTTCCCTTTCCAACCCAACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACCTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCTTTTGACCCTGTTGAATATGGTGGAAAAGTGTTTGTGCCTGGCCAGGCTAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGAACCATTCGTGTGCATGATGACCTTCTTCTGGCAGCTGCTGAAGCTTTGGCTTCACAGGTGACTGAAGAGGACTATAGTAAGGGGCTCATATACCCTCCATTCAGAAACATCAGAAAGATTTCAGCACACATAGCAGCCAAGGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAACCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAACTCTATGTATACACCAGCCTATAGAAACTACATCTAA 1923 0.4472 MFSSNACSFMCKSGVGGWSSCSNFSASQRRRSAPSRVTCCAPTSSSGKTHGGFVMDKEANGTPTAVGETPTSGGGVRDVYGEDKATEDQCVTPWSVSVSSGYTLIRDPHFNKGLAFTEEERDAHFLRGLLPPSVISQETQVKKMIQHIRQYQVPLQKYVAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMQPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNEKLLNEELYIGLKHKRVTGQEYAELLHEFMNAVKQIYGEKVLVQFEDFANHNAFSLLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGNLTDHRFLFLGAGEAGTGIAELLALETSKRTNVPVEELRKNIWLVDSQGLIVKSREDSLQHFKRPWAHEHEPVKELVDAINKIKPTVLIGTSGQGRAFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYGGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAAAEALASQVTEEDYSKGLIYPPFRNIRKISAHIAAKVAAKAYELGLATNLPQPKDLVKFAENSMYTPAYRNYI* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0183 640 ProSitePatterns Malic enzymes signature. 352 368 IPR015884 GO:0004471
Vra9g0183 640 Pfam Malic enzyme, NAD binding domain 356 608 IPR012302 GO:0051287
Vra9g0183 640 PRINTS Malic enzyme signature 171 195 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 231 260 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 267 289 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 327 345 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 352 368 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 383 399 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 PRINTS Malic enzyme signature 486 502 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 Pfam Malic enzyme, N-terminal domain 165 346 IPR012301 GO:0004471
Vra9g0183 640 PANTHER MALIC ENZYME-RELATED 72 639 - -
Vra9g0183 640 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 83 355 IPR046346 -
Vra9g0183 640 Gene3D - 99 353 IPR037062 GO:0004471
Vra9g0183 640 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 356 639 IPR036291 -
Vra9g0183 640 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 72 639 - -
Vra9g0183 640 SMART Malic_M_2 356 609 IPR012302 GO:0051287
Vra9g0183 640 SMART malic_2 165 346 IPR012301 GO:0004471
Vra9g0183 640 PIRSF ME 68 640 IPR001891 GO:0004470|GO:0004471
Vra9g0183 640 Gene3D - 354 640 - -
Vra9g0183 640 CDD NAD_bind_1_malic_enz 356 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0183 Vra-Chr9 1278012 1283590 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0183 K00029 - gmx:100785718 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0183 9 1278012 1283590 Vra5g2478 5 31741408 31746783 ECH
Vra7g3280 7 52354683 52359769 Vra9g0183 9 1278012 1283590 ECH
Vra1g0478 1 5746597 5751304 Vra9g0183 9 1278012 1283590 ECH
Vra9g0183 9 1278012 1283590 Vra9g0183 9 1278012 1283590 ECH
Vra9g0183 9 1278012 1283590 Vra5g1007 5 16491169 16496012 ECH
Vra5g2478 5 31741408 31746783 Vra9g0183 9 1278012 1283590 PCT