Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0478 ATGGAGAGCATTTTGAAGCCCCTGAGAGATGGTGAGTCAGTGCTTGATCTGAGTCCGAGATCAACCGTGAGTGGTGGTGTTGAAGATGTCTACGGTGAGGATCATGCCACCGAGGACCAACTTGTCACCCCATGGACTTTCTCAGTTGCCAGTGGGTATTCTTTGCTTAGAGATCCACAGTTCAACAAGGGGCTTGCTTTCACTGAGAAAGAGAGAGATGCACACTATTTGCGTGGACTATTACCTCCTACAATCACCTCCCAGAAACTTCAGGAGAAACAGTTGATAAACAATTTCCGACAGTATCAGGTGCCATTGCAGAAGTACATAGCTATGATGGAACTTCAGGAGACAAATCAAAGGCTGTTTTACAAACTTCTAGTTGACAATGTTGAGGAACTGCTCCCAATTGTGTATACTCCTGTTGTTGGTGAGGCCTGCCAGAAATATGGGAGCATCTTCAAGCGTCCTCAGGGTCTTTTCATAAGTTTGAAAGAGAAGGGAAAGATACTTGAGGTGTTGAAAAACTGGCCCGAAAAGAGTATTCAAGTTATTGTTGTAACAGATGGTGAACGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCCTTGTACACAGCATTAGGAGGAGTTCGTCCATCAGCATGTTTGCCTATTACGATTGATGTGGGAACAAACAACGAGAAATTACTGAATGATGAGTTTTACATCGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAATATTCCGAACTTCTGCATGAGTTCATGACTGCTGTCAAGCAAAACTACGGAGAAAAAGTTCTTATACAGTTTGAAGATTTTGCGAACCACAACGCTTTTGAGTTGCTTGCAAAATATGGTACAACTCATCTTGTTTTCAATGATGATATTCAGGGAACTGCATCTGTGGTACTTGCTGGGGTTGTGGCAGCCTTGAAGCTTATTGGTGGTACTCTGGCTGACCACACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGTACAGGAATAGCAGAACTTATAGCTCTCGAAACATCAAAGCAGACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTCGATTCAAAGGGTTTGATTGTTAGTTCAAGAAAGCATTCACTTCAACATTTCAAGAAGCCATGGGCTCATGAACATGAGCCTGTTGACACTCTCTTAGAAGCTGTTAAGGTAATCAAACCTACAGTTTTGGTTGGATCATCAGGAGTGGGAAAAACATTTACAAAGGAAGTAATTGAAGCTTTGTCTTCCATCAATGAAAAACCTCTTATTTTGGCTCTCTCTAATCCAACATCACAATCTGAGTGTACAGCTGAAGAGGCTTACCAATGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTATAGAATACAAGGGAAAAGTGTACTATTCAGGCCAGGCCAACAATGCTTACATTTTCCCTGGTTTTGGTTTGGGATTGGTAATCTCTGGAGCAATCCGAGTTCATGATGATATGCTTCTTGCAGCATCGGAAGCCTTGGCTAAACTAGTGACTGAGGAGAACTATGAAAAGGGCTTGATTTATCCACCATTCTCTGACATCAGAACAATTTCAGCTAACATAGCCGCAGGTGTTGCTGCCAGGGCATATGAGCTAGGCTTGGCTACACGTCTCCCTCGTCCTGAGAATCTTGTGAAGTATGCCCAGAGTTGCATGTATTCTCCTGTGTACCGAAACTATAGGTGA 1776 0.4358 MESILKPLRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWTFSVASGYSLLRDPQFNKGLAFTEKERDAHYLRGLLPPTITSQKLQEKQLINNFRQYQVPLQKYIAMMELQETNQRLFYKLLVDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALETSKQTKTPIEETRKKIWLVDSKGLIVSSRKHSLQHFKKPWAHEHEPVDTLLEAVKVIKPTVLVGSSGVGKTFTKEVIEALSSINEKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPIEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPPFSDIRTISANIAAGVAARAYELGLATRLPRPENLVKYAQSCMYSPVYRNYR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0478 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Vra1g0478 591 Pfam Malic enzyme, N-terminal domain 116 296 IPR012301 GO:0004471
Vra1g0478 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Vra1g0478 591 SMART malic_2 116 297 IPR012301 GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 122 146 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 182 211 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 218 240 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 278 296 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 303 319 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 334 350 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 PANTHER MALIC ENZYME 20 591 - -
Vra1g0478 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
Vra1g0478 591 PIRSF ME 24 591 IPR001891 GO:0004470|GO:0004471
Vra1g0478 591 Gene3D - 50 304 IPR037062 GO:0004471
Vra1g0478 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 29 306 IPR046346 -
Vra1g0478 591 CDD NAD_bind_1_malic_enz 307 585 - -
Vra1g0478 591 PANTHER MALIC ENZYME-RELATED 20 591 - -
Vra1g0478 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Vra1g0478 591 Gene3D - 305 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0478 Vra-Chr1 5746597 5751304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0478 K00029 - gmx:100796117 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0478 1 5746597 5751304 Vra9g0183 9 1278012 1283590 ECH
Vra1g0478 1 5746597 5751304 Vra5g2478 5 31741408 31746783 ECH
Vra1g0478 1 5746597 5751304 Vra5g1007 5 16491169 16496012 ECH
Vra1g0478 1 5746597 5751304 Vra1g0478 1 5746597 5751304 ECH
Vra7g3280 7 52354683 52359769 Vra1g0478 1 5746597 5751304 PCT