Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3280 ATGATTTCGTTGAACACTGCCAATTTAATGGGACACGGGTGCTCAAAAAACTTGGGAATTTCTGGCTGGTGTGGCGGTGATAAGAGGAAAATATCAGAGAAAGTTGTGTTGCGTGTGAACTCAAAGGTTCGTGAACATAATAATATCCATAACACTGGTAAAGAAGAAGAGGGAGAAGAGAAGAAAGTGATTGGTAGGAAGATGGAGAGCGTACTGAAGCCACTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCCAGATCCACCGTCAGCGGTGGCGTTGAGGATGTCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTCACCCCATGGACTATCTCAGTTGCCAGTGGTTGGTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCAGTGAGAAAGAGAGGGATGCACACTATTTGCGTGGACTTCTACCTCCCACTGTCCTCACTCAGTTACTTCAGGAGAAGAAACTGATGCACAACATCAGGCAGTATAAAGTTCCCTTGCAAAAGTACGTGGCCATGATGGAACTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTACTCGTTGACAATGTTGAAGAATTGCTCCCAGTTGTGTATACTCCCACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAGTCCTTGAGGTTTTGAAAAACTGGCCTGAGAGGACTATTCAAGTTATTGTTGTAACTGATGGTGAGCGAATTTTGGGACTTGGAGATCTTGGATGTCAGGGGATGGGGATTCCTGTTGGTAAATTGGCTTTGTACACTGCACTAGGAGGAGTTCGTCCTTCAGCTTGTTTGCCTGTCACTATCGATGTGGGGACAAATAATGAGACATTATTGAAGGATGAATTTTACATTGGCCTCAGACAAAAAAGGGCAACTGGGCAGGAATATTACGACCTTCTGGATGAGTTCATGACTGCTGTGAAGCAAAATTACGGAGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTGCTTGCTAAATATGGTACAACACATCTTGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGGACCTTACCTGAGCACAAATTCCTCTTTCTCGGTGCTGGAGAAGCTGGAACTGGTATAGCAGAGTTAATAGCTCTTGAGATGTCAAAGCAGACTAAGGCACCCATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTGATTGTTAGTTCCCGGAAGAATTCACTTCAACACTTCAAGAAGCCCTGGGCTCATGAACATGAGCCAGTCAACAGTCTCCTAGAAGCCGTGAAGGTGATCAAGCCTACAGTTTTGATTGGATCCTCTGGTGTGGGAAAAACATTTACAAAGGAAGTGGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACTGCCGAAGAGGCTTACCAATGGAGTGAGGGTCGTGCAATTTTCGCTAGTGGTAGTCCATTTGATCCAGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCTATTCGAGTACATGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCAAAACAAGTGAGCGAGGAGAACTACAGAAATGGTTTGATTTACCCACCATTCTCTAATATCAGAAAAATCTCCGCAAATATAGCAGCAAATGTTGCTGCCAAGGCTTACGAACTAGGCTTGGCCACTCGTCTTCCACGACCTCAGGATCTTGTGAAGTATGCTGAGAGTTGCATGTATACACCTGTATACCGCAACTATAGGTGA 1977 0.4482 MISLNTANLMGHGCSKNLGISGWCGGDKRKISEKVVLRVNSKVREHNNIHNTGKEEEGEEKKVIGRKMESVLKPLRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTISVASGWSLLRDPQYNKGLAFSEKERDAHYLRGLLPPTVLTQLLQEKKLMHNIRQYKVPLQKYVAMMELQERNERLFYKLLVDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKVLEVLKNWPERTIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNETLLKDEFYIGLRQKRATGQEYYDLLDEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHKFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYRNGLIYPPFSNIRKISANIAANVAAKAYELGLATRLPRPQDLVKYAESCMYTPVYRNYR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3280 658 Gene3D - 117 371 IPR037062 GO:0004471
Vra7g3280 658 Pfam Malic enzyme, N-terminal domain 183 363 IPR012301 GO:0004471
Vra7g3280 658 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 96 373 IPR046346 -
Vra7g3280 658 SMART malic_2 183 364 IPR012301 GO:0004471
Vra7g3280 658 PIRSF ME 85 658 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 Pfam Malic enzyme, NAD binding domain 374 626 IPR012302 GO:0051287
Vra7g3280 658 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 374 657 IPR036291 -
Vra7g3280 658 CDD NAD_bind_1_malic_enz 374 652 - -
Vra7g3280 658 PANTHER MALIC ENZYME 25 658 - -
Vra7g3280 658 SMART Malic_M_2 374 627 IPR012302 GO:0051287
Vra7g3280 658 PANTHER MALIC ENZYME-RELATED 25 658 - -
Vra7g3280 658 ProSitePatterns Malic enzymes signature. 370 386 IPR015884 GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 189 213 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 249 278 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 285 307 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 345 363 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 370 386 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 401 417 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 PRINTS Malic enzyme signature 504 520 IPR001891 GO:0004470|GO:0004471
Vra7g3280 658 Gene3D - 372 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3280 Vra-Chr7 52354683 52359769 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3280 K00029 - gmx:100782096 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3280 7 52354683 52359769 Vra9g0183 9 1278012 1283590 ECH
Vra7g3280 7 52354683 52359769 Vra5g2478 5 31741408 31746783 ECH
Vra7g3280 7 52354683 52359769 Vra5g1007 5 16491169 16496012 ECH
Vra7g3280 7 52354683 52359769 Vra7g3280 7 52354683 52359769 ECH
Vra7g3280 7 52354683 52359769 Vra1g0478 1 5746597 5751304 PCT